Detail information of ath-miR5014b

Basic Info
Non-coding RNA IDath-miR5014b
SpeciesArabidopsis thaliana
classmiRNA
Chromosomechr1
Start Site (precursors if it is microRNA)24605427
End Site (precursors if it is microRNA)24605567
Strand-
Length21
AssemblyTAIR10
Annotation
Source Gene Model
Reference
PMID: "24275495"
miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A. and Griffiths-Jones, S.
Nucleic acids research, 42, D68-73.(2014)
Sequence and structure Info

Stem-loop sequence[ath-MIR5014b]

UAGUCACUUUUCACUGUUUGAUUUGUACACCUAGAUCUGUACAACACUUUUAUUGUACAGAUGUAAGUGUACGUUGUGUAUUUUUAUAUACAUUUGUACACUAAAAAUGUUGUACAGAUCUAAGUGUACAAAUCAAACAGU

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

Mature sequence[ath-miR5014b]

AUUUGUACACCUAGAUCUGUA

Gene Structure
GBrowser Information: detail
Targets Info
target nameAlignmentExpectionTarget DescriptionTarget typeMethod
AT1G73750.1
 ncRNA:21AUGUCUAGAUCCACAUGUUUA1
   ||=|*||=||*|||||||||| 
 targets:1447UAUACAUUUAUGUGUACAAAU1467
3| Symbols: | Uncharacterised conserved protein UCP031088, alpha/beta hydrolase | chr1:27736630-27739079 FORWARD LENGTH=1580coding genepsRNATarget[Detail]