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We provide all information collected into the database, including ncRNA sequences in fasta format, reference information used in the text-mining pools, target information about miRNA-target alignment conditions and target annotation.

Sequence Info

Speciestype of ncRNA
miR(stem_loop)miR(mature)lncRNAsnoRNAsnRNAtasiRNAtRNA
All Species
Acacia auriculiformisNANANANANA
Acacia mangiumNANANANANA
Aegilops speltoidesNANANANANA
Aegilops tauschiiNANANANANA
Alliaria petiolataNANANANANA
Allium cepaNANANANANA
Annona cherimolaNANANANANA
Antirrhinum majusNANANANANA
Aquilegia coeruleaNANANANANA
Arabidopsis arenosaNANANANANA
Arabidopsis cebennensisNANANANANA
Arabidopsis halleriNANANANANA
Arabidopsis lyrataNANANANA
Arabidopsis thaliana
Arabis hirsutaNANANANANA
Arachis hypogaeaNANANANANA
Australopyrum velutinumNANANANANA
Avena sativaNANANANANA
Avicennia marinaNANANANANA
Barbarea vulgarisNANANANANA
Boechera strictaNANANANANA
Brachypodium distachyonNANANANANA
Brachypodium sylvaticumNANANANANA
Brassica napusNANANANA
Brassica oleraceaNANANANANA
Brassica rapaNANANANA
Bruguiera cylindricaNANANANANA
Bruguiera gymnorhizaNANANANANA
Camelina microcarpaNANANANANA
Capsella rubellaNANANANANA
Capsicum annuumNANANANANA
Carica papayaNANANANANA
Chlamydomonas reinhardtiiNANANANANA
Citrus clementineNANANANANA
Citrus reticulataNANANANANA
Citrus sinensisNANANANANA
Citrus trifoliataNANANANANA
Citrus x paradisi x Poncirus trifoliataNANANANANA
Conringia orientalisNANANANANA
Corylus avellanaNANANANANA
Cucumis meloNANANANANA
Cucumis sativusNANANANANANA
Cunninghamia lanceolataNANANANA
Cycas rumphiiNANANANANA
Cynara cardunculusNANANANANA
Descurainia sophiaNANANANANA
Dictyostelium discoideumNANANANANA
Digitalis purpureaNANANANANA
Elaeis guineensisNANANANANA
Erysimum cheiriNANANANANA
Eschscholzia californicaNANANANANA
Festuca arundinaceaNANANANANA
Festuca glaucescens x Lolium multiflorumNANANANANA
Fourraea alpinaNANANANANA
Ganoderma lucidumNANANANANANA
Glycine clandestinaNANANANANA
Glycine maxNANANA
Glycine sojaNANANANANA
Gossypium arboreumNANANANANA
Gossypium barbadenseNANANANA
Gossypium herbaceumNANANANANA
Gossypium hirsutumNANANANANA
Gossypium raimondiiNANANANANA
Hedyotis centranthoidesNANANANANA
Hedyotis terminalisNANANANANA
Helianthus annuusNANANANANA
Helianthus argophyllusNANANANANA
Helianthus ciliarisNANANANANA
Helianthus exilisNANANANANA
Helianthus paradoxusNANANANANA
Helianthus petiolarisNANANANANA
Helianthus tuberosusNANANANANA
Henrardia persicaNANANANANA
Heteranthelium piliferumNANANANANA
Hevea brasiliensisNANANANANA
Hordeum vulgare subsp. SpontaneumNANANANANA
Hordeum vulgare subsp. VulgareNANANANA
Ipomoea batatasNANANANANA
Ipomoea nilNANANANANA
Lactuca sativaNANANANANA
Linum usitatissimumNANANANANA
Liriodendron tulipiferaNANANANANA
Lotus japonicusNANANANA
Lupinus luteusNANANANANA
Malcolmia maritimaNANANANANA
Malus domesticaNANANANA
Manihot esculentaNANANANANA
Medicago sativaNANANANANANA
Medicago truncatulaNANA
Nasturtium officinaleNANANANANA
Nicotiana benthamianaNANANANA
Nicotiana sylvestrisNANANANANA
Nicotiana tabacumNANANA
Nuphar advenaNANANANANA
Oenocarpus batauaNANANANANA
Olea europaeaNANANANANANA
Oryza barthiiNANANANANA
Oryza brachyanthaNANANANANA
Oryza nivaraNANANANANA
Oryza rufipogonNANANANANA
Oryza sativa
Panax ginsengNANANANANA
Panicum virgatumNANANANANA
Pennisetum ciliareNANANANANA
Pennisetum glaucumNANANANANA
Peridictyon sanctumNANANANANA
Persea americanaNANANANANA
Petunia x hybridaNANANANANA
Phaseolus coccineusNANANANANA
Phaseolus vulgarisNANANANANA
Phleum pratenseNANANANANA
Physcomitrella patensNANANANA
Picea abiesNANANANANA
Picea glaucaNANANANANA
Picea sitchensisNANANANANA
Pinus densataNANANANANA
Pinus taedaNANANANA
Populus euphraticaNANANANANA
Populus tomentosaNANANANANANA
Populus tremulaNANANANA
Populus tremula x Populus tremuloidesNANANANANA
Populus tremuloidesNANANANANA
Populus trichocarpaNANANA
Populus trichocarpa x Populus deltoidesNANANANANA
Prunus armeniacaNANANANANA
Prunus persicaNANANANANA
Prunus salicinaNANANANANA
Rehmannia glutinosaNANANANANA
Ricinus communisNANANANANA
Rorippa indicaNANANANANA
Saccharum officinarumNANANANANA
Saccharum spp.NANANANANA
Salvia sclareaNANANANANA
Schedonorus arundinaceusNANANANANA
Secale cerealeNANANANANA
Selaginella moellendorffiiNANANANANA
Sesamum indicumNANANANANA
Setaria italicaNANANANA
Sibara virginicaNANANANANA
Solanum demissumNANANANA
Solanum lycopersicumNANANA
Solanum tuberosumNANANANANA
Sorghum bicolorNANANANANA
Sorghum propinquumNANANANANA
Theobroma cacaoNANANANANA
Thlaspi arvenseNANANANANA
Trifolium repensNANANANANA
Triticum aestivumNANANA
Triticum monococcumNANANANANA
Triticum turgidumNANANANANA
Triticum urartuNANANANANA
Vigna unguiculataNANANANANA
Vitis viniferaNANANA
Zea maysNANANA
Zinnia elegansNANANANANA

Target Info

SpeciesPutative Targets
All Species
Allium cepa
Aquilegia coerulea
Arabidopsis thaliana
Brachypodium distachyon
Brassica napus
Brassica rapa
Capsicum annuum
Citrus clementine
Carica papaya
Citrus reticulata
Citrus sinensis
Festuca arundinacea
Glycine max
Gossypium hirsutum
Gossypium raimondii
Helianthus annuus
Hordeum vulgare subsp. Vulgare
Ipomoea nil
Lactuca sativa
Linum usitatissimum
Lotus japonicus
Malus domestica
Manihot esculenta
Medicago truncatula
Nicotiana benthamiana
Nicotiana tabacum
Oryza sativa
Picea abies
Phaseolus coccineus
Petunia x hybrida
Prunus persica
Physcomitrella patens
Pinus taeda
Populus trichocarpa
Panicum virgatum
Phaseolus vulgaris
Sorghum bicolor
Setaria italica
Solanum lycopersicum
Selaginella moellendorffii
Saccharum officinarum
Solanum tuberosum
Triticum aestivum
Theobroma cacao
Vigna unguiculata
Vitis vinifera
Zea mays

Reference Info

Information areaContents
Text-mining related literature
Curated functional keywords

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