Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr062960954829609568+
precursorchr062960954529609808+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
AAGUCAUCAACAACAAAGUUG
>precursor_sequence
AAAAAGUCAUCAACAACAAAGUUGUAGAAAUCAUUAAUAUCUAAAACUUUUAUUUUGGUCAUUUAUCCAUUCGAUAAAGUGAUAGCAACAUUGUUC
AUAAAUUUUACAAAUCCCUCGUAUGGUUUCAUAAACUAUAAGAGAGAUAUGUAAAUUUUGUGAACAAUAUUACUAUCACUUUCUCGGAUGAACAAA
UACCUAAAAUAAAAGUUGUAUAUAUUGAUGAGUUCUACAACUUUUAUGUUCAUGAAUUUUUCGAAUGAAAUC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end		Target_aligned
start-end		Aligned Fragment:
miRNA-Target
Sobic.002G3004002.518.40921-1814-834

GUUGAAACAACAACUACUGAA
||*||||||||||||||=||*
CAUCUUUGUUGUUGAUGGCUG

Sobic.001G5192003.016.55321-1688-708

GUUGAAACAACAACUACUGAA
|=|=||*|||||||=||=|||
CGAUUUGGUUGUUGGUGGCUU

Sobic.006G0796002.58.7821-125-45

GUUGAAACAACAACUACUGAA
=||||||=|||||||||*|||
UAACUUUUUUGUUGAUGUCUU

Sobic.002G2780003.020.23420-11314-1333

UUGAAACAACAACUACUGAA
=*|||||||||||=|||=||
GUCUUUGUUGUUGGUGAUUU

Sobic.002G2780003.017.56320-11309-1328

UUGAAACAACAACUACUGAA
=*|||||||||||=|||=||
GUCUUUGUUGUUGGUGAUUU

Sobic.002G2780003.016.7520-11314-1333

UUGAAACAACAACUACUGAA
=*|||||||||||=|||=||
GUCUUUGUUGUUGGUGAUUU

Sobic.002G2669002.515.37120-11677-1696

UUGAAACAACAACUACUGAA
||=*||||||||||||==||
AAUGUUGUUGUUGAUGGUUU

Sobic.001G1355002.517.22120-13379-3398

UUGAAACAACAACUACUGAA
=|=||||*|||||||||=||
GAUUUUGAUGUUGAUGAUUU

Sobic.003G2984003.012.89920-11045-1064

UUGAAACAACAACUACUGAA
||=||||||||*||||=|||
AAUUUUGUUGUCGAUGCCUU

Sobic.004G2004003.014.84720-11657-1676

UUGAAACAACAACUACUGAA
||||||||*||||||*|=||
AACUUUGUAGUUGAUAAUUU

Sobic.001G3854003.019.10721-12219-2239

GUUGAAACAACAACUACUGAA
==|=||||*|=||||||||||
UGAUUUUGCUUUUGAUGACUU


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24002.691
seedling_root_AR2400_ave2.698
seedling_shoot_AR2400_ave2.911
shoot_tip_38_AR24002.768
internode_61DAP_AR2400_T3.131
internode_70DAP_AR2400_M3.152
internode_61DAP_AR2400_B3.056
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas2.876
seedling_root_Atlas2.752
seedling_shoot_Atlas_ave2.847
shoot_tip_38_Atlas2.825
internode_61DAP_Atlas_T3.063
internode_70DAP_Atlas_M2.878
internode_61DAP_Atlas_B3.143
pith_70DAP_Atlas_T2.924
pith_70DAP_Atlas_M3.173
pith_70DAP_Atlas_B2.968
pith_60DAP_Atlas_ave3.021
rind_70DAP_Atlas_T2.857
rind_70DAP_Atlas_M2.814
rind_70DAP_Atlas_B2.745
rind_60DAP_Atlas_ave2.952
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont2.835
seedling_root_Fremont_ave2.834
seedling_shoot_Fremont_ave3.141
shoot_tip_38_Fremont2.848
internode_61DAP_Fremont_T3.131
internode_70DAP_Fremont_M3.197
internode_61DAP_Fremont_B2.783
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526112.885
seedling_root_PI1526113.078
seedling_shoot_PI152611_ave2.846
shoot_tip_38_PI1526113.048
internode_61DAP_PI152611_T2.654
internode_70DAP_PI152611_M2.821
internode_61DAP_PI152611_B2.884
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552302.974
seedling_root_PI4552302.823
seedling_shoot_PI455230_ave2.871
shoot_tip_38DAP_ PI4552302.664
internode_61DAP_PI4552302.962
internode_70DAP_PI455230_M2.938
internode_61DAP_PI455230_B3.064
pith_70DAP_PI455230_M3.004
pith_70DAP_PI455230_B2.884
pith_60DAP_PI455230_ave2.935
rind_70DAP_PI455230_T2.796
rind_70DAP_PI455230_M3.025
rind_70DAP_PI455230_B2.854
rind_60DAP_PI455230_ave2.880
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1592.951
seedling_root_R1592.887
seedling_shoot_R159_ave2.936
shoot_tip_38DAP_ R1592.904
internode_61DAP_R159_T2.909
internode_61DAP_R159_B2.894
pith_70DAP_R159_T2.861
pith_70DAP_R159_B2.805
pith_60DAP_R1593.115
rind_70DAP_R159_T3.075
rind_70DAP_R159_B3.163
rind_60DAP_R1592.923

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