Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr024749115947491179-
precursorchr024749092647491198-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
AAGUUAUGAACAUAAAAGUUG
>precursor_sequence
UAAAUGAUUUCAGAUGAAAAAGUUAUGAACAUAAAAGUUGUAGAACUGAUUAAGAUCUACACCUUUUAUUUUGGUCAUUUGUUCAUCCAAUGAAAU
GAUAGUAACAUUGUUCACAAAAUUUAUAUAUCUCACUCUUAUAGUUUAUAAAACCAUAUGAGAGAGAUGUAAAAUUUAUGAACAAUGUUAGUAUCA
CUCUAUCGGAUGAAAAAAUGACCAAAAUAAUAGUUAUAGAUCUUGAUGACUUCUAUAACUUUGUUGUUGAUAACUUUUUCA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end		Target_aligned
start-end		Aligned Fragment:
miRNA-Target
Sobic.006G0825002.514.58621-1966-986

GUUGAAAAUACAAGUAUUGAA
||||||||=||||||||||*|
CAACUUUUCUGUUCAUAACAU

Sobic.008G1790003.014.68121-12446-2466

GUUGAAAAUACAAGUAUUGAA
||||||||=||*|==|||=||
CAACUUUUGUGCUUGUAAUUU

Sobic.002G1721003.017.40120-13311-3330

UUGAAAAUACAAGUAUUGAA
**=||||||||||||=||||
UUUUUUUAUGUUCAUGACUU

Sobic.002G1498003.013.85520-1882-901

UUGAAAAUACAAGUAUUGAA
||=||||||||||=|=|=|*
AAUUUUUAUGUUCGUGAUUC

Sobic.003G4067002.514.60820-11380-1399

UUGAAAAUACAAGUAUUGAA
=|*|||||||||=||||=||
GAGUUUUAUGUUUAUAAUUU

Sobic.001G1858003.012.97621-11865-1885

GUUGAAAAUACAAGUAUUGAA
=||||||||||||*=|||=||
UAACUUUUAUGUUGCUAAUUU


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24002.386
seedling_root_AR2400_ave2.571
seedling_shoot_AR2400_ave2.677
shoot_tip_38_AR24002.466
internode_61DAP_AR2400_T2.526
internode_70DAP_AR2400_M2.591
internode_61DAP_AR2400_B2.692
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas2.402
seedling_root_Atlas2.6
seedling_shoot_Atlas_ave2.640
shoot_tip_38_Atlas2.661
internode_61DAP_Atlas_T2.561
internode_70DAP_Atlas_M2.719
internode_61DAP_Atlas_B2.671
pith_70DAP_Atlas_T2.541
pith_70DAP_Atlas_M2.609
pith_70DAP_Atlas_B2.568
pith_60DAP_Atlas_ave2.603
rind_70DAP_Atlas_T2.492
rind_70DAP_Atlas_M2.789
rind_70DAP_Atlas_B2.646
rind_60DAP_Atlas_ave2.671
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont2.776
seedling_root_Fremont_ave2.689
seedling_shoot_Fremont_ave2.955
shoot_tip_38_Fremont2.805
internode_61DAP_Fremont_T2.631
internode_70DAP_Fremont_M2.818
internode_61DAP_Fremont_B2.748
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526112.377
seedling_root_PI1526112.74
seedling_shoot_PI152611_ave2.793
shoot_tip_38_PI1526112.96
internode_61DAP_PI152611_T2.646
internode_70DAP_PI152611_M2.664
internode_61DAP_PI152611_B2.776
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552303.186
seedling_root_PI4552302.648
seedling_shoot_PI455230_ave2.532
shoot_tip_38DAP_ PI4552302.397
internode_61DAP_PI4552302.6
internode_70DAP_PI455230_M2.565
internode_61DAP_PI455230_B2.649
pith_70DAP_PI455230_M2.638
pith_70DAP_PI455230_B2.359
pith_60DAP_PI455230_ave2.609
rind_70DAP_PI455230_T2.632
rind_70DAP_PI455230_M2.483
rind_70DAP_PI455230_B2.806
rind_60DAP_PI455230_ave2.635
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1592.53
seedling_root_R1592.71
seedling_shoot_R159_ave2.687
shoot_tip_38DAP_ R1592.799
internode_61DAP_R159_T2.526
internode_61DAP_R159_B2.722
pith_70DAP_R159_T2.572
pith_70DAP_R159_B2.433
pith_60DAP_R1592.501
rind_70DAP_R159_T2.631
rind_70DAP_R159_B2.793
rind_60DAP_R1592.653

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