Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr0785772968577319+
precursorchr0785771868577335+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
AACGAACAGUAUUUUUCUCUUACA
>precursor_sequence
UGUUUACUAAUUUAUUGUGAGAGAAAAAUACUGUUGGCUGGCAGAAAAAGUAUGGCACAAGUAUGGCACAGUCUUGUUCAUUUGUCUUAUAAGCCG
UAUUUUUUUUUGUCAACGAACAGUAUUUUUCUCUUACAAUAAAAUCAGCGAACA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.004G1756001.517.01624-11299-1322

ACAUUCUCUUUUUAUGACAAGCAA
|||=||||||||||==||||=|||
UGUGAGAGAAAAAUGUUGUUUGUU

Sobic.004G1756001.517.01624-11383-1406

ACAUUCUCUUUUUAUGACAAGCAA
|||=||||||||||==||||=|||
UGUGAGAGAAAAAUGUUGUUUGUU

Sobic.004G1756001.517.01624-12203-2226

ACAUUCUCUUUUUAUGACAAGCAA
|||=||||||||||==||||=|||
UGUGAGAGAAAAAUGUUGUUUGUU

Sobic.002G2158002.518.98724-1932-955

ACAUUCUCUUUUUAUGACAAGCAA
|||||*|||||||||||||||=||
UGUAAAAGAAAAAUACUGUUCUUU

Sobic.009G1319002.019.89424-11580-1603

ACAUUCUCUUUUUAUGACAAGCAA
|||=||||=||||*|=||||||||
UGUGAGAGGAAAACAUUGUUCGUU

Sobic.009G1537002.512.32424-12098-2121

ACAUUCUCUUUUUAUGACAAGCAA
|||=|||||||||||*||||*|||
UGUGAGAGAAAAAUAAUGUUGGUU

Sobic.007G0754003.011.44324-13665-3688

ACAUUCUCUUUUUAUGACAAGCAA
|||=||||||||||||||||*|*|
UGUGAGAGAAAAAUACUGUUGGCU

Sobic.003G2764002.011.13724-13045-3068

ACAUUCUCUUUUUAUGACAAGCAA
|*|=||||=|||||||||||=||*
UAUGAGAGGAAAAUACUGUUUGUG

Sobic.009G1102002.511.88824-11189-1212

ACAUUCUCUUUUUAUGACAAGCAA
||*=|||*|||||||||||||=||
UGAGAGAAAAAAAUACUGUUCUUU

Sobic.004G2980003.012.90524-12055-2078

ACAUUCUCUUUUUAUGACAAGCAA
|=|=||||||||||||||||*=||
UUUGAGAGAAAAAUACUGUUAUUU

Sobic.006G2737002.511.63521-11249-1269

UUCUCUUUUUAUGACAAGCAA
=|||||||=|||=|*||||||
GAGAGAAAGAUAUUAUUCGUU

Sobic.001G1345002.515.52621-11272-1292

UUCUCUUUUUAUGACAAGCAA
|=|=||||||*|=||||||||
AGGGGAAAAAAAUUGUUCGUU

Sobic.003G4223003.015.29921-1315-335

UUCUCUUUUUAUGACAAGCAA
||||||=|=||*=||||||||
AAGAGAGACAUUUUGUUCGUU

Sobic.003G4223003.016.82621-1315-335

UUCUCUUUUUAUGACAAGCAA
||||||=|=||*=||||||||
AAGAGAGACAUUUUGUUCGUU

Sobic.007G0403003.014.09323-1869-891

CAUUCUCUUUUUAUGACAAGCAA
|*==*|||||||||=*|||||||
GAGGAAGAAAAAUAUGGUUCGUU


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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