Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr094744287147442894-
precursorchr094744273747442935-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
AAGUGUGUUCCUCUAUUUGACGCU
>precursor_sequence
UCUUCUCUCUCCACUACUCUCGCCUACUCUUUUCCGUAUGCAAGUGUGUUCCUCUAUUUGACGCUAAAGGUGGGUGCCCCCAUUGAAACACUUCAC
AAAUGUUGCUGUUGCAUUUGGUAGUAUUCGUACCUUUAGCGUCAAGAGACGAACACACUUGCCCAUCGAAAACGACAAGGUGUGUAGUGUUGGAAC
AAGAAGA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.003G3432003.018.33421-1660-680

CAGUUUAUCUCCUUGUGUGAA
||||=||=||*|||||=|=||
GUCAGAUGGAAGAACAUAUUU

Sobic.001G3476003.013.79520-11370-1389

AGUUUAUCUCCUUGUGUGAA
*|||=|||||||||*|||||
ACAAGUAGAGGAACUCACUU

Sobic.001G0885002.520.3820-11642-1661

AGUUUAUCUCCUUGUGUGAA
|||=||=|||*|||||||||
UCAGAUCGAGCAACACACUU

Sobic.003G0572003.014.79422-11717-1738

GCAGUUUAUCUCCUUGUGUGAA
|*||||=|=|||=||||=||||
CAUCAAGUCGAGUAACAUACUU


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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