Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr024667127146671291+
precursorchr024667124146671390+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
GUCCGUGAGUCCACAAAUAGG
>precursor_sequence
GACUCAUGAGCAAGGAUACAAGUGGGUUUUGUCCGUGAGUCCACAAAUAGGCCAUUUUCCCCUGGGGUCUGUGGUCUGUAGAACCGCGUAAAAAUA
ACCUAUUUGUGGACUCAUGGACAUGCCCUUUUGGUACUAAGUCAUAAGUGGGUC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end		Target_aligned
start-end		Aligned Fragment:
miRNA-Target
Sobic.003G2693002.519.55520-190-109

GAUAAACACCUGAGUGCCUG
*|||||||||==||=|||||
AUAUUUGUGGGUUCGCGGAC

Sobic.001G0413003.016.66520-1220-239

GAUAAACACCUGAGUGCCUG
|||*||||||||||*=||||
CUAAUUGUGGACUCUUGGAC

Sobic.002G3365003.019.65621-1814-834

GGAUAAACACCUGAGUGCCUG
=|||*||||||||*||=|||=
UCUAGUUGUGGACCCAUGGAU

Sobic.009G0458003.019.12521-1658-677

GGAUAAACACCUGAGUGCCUG
=|||||*|||*||||||||||
UCUAUU-GUGCACUCACGGAC


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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