Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr095033512750335147+
precursorchr095033499650335171+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UAACAAGUUUAGGGAUCUAGA
>precursor_sequence
GUCCACAAACUUUGUAAACACAUUUUUGGGUCCCUAAACUUGUUAUGUGGUGCAGCGCACAUCCCUAAACUUAUAAAAUGGUGCACCGCAGGUCCA
UUUCUGGACCAUACCGACCACUGUGGUGCGCCACUUAACAAGUUUAGGGAUCUAGAAAUGCGUUUUCAAAGUUCGUGGGC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.002G1074001.015.55121-177-97

AGAUCUAGGGAUUUGAACAAU
|||=||||=||||||||||||
UCUGGAUCUCUAAACUUGUUA

Sobic.009G0142002.014.75521-12726-2746

AGAUCUAGGGAUUUGAACAAU
|||||||||*||||||||||*
UCUAGAUCCAUAAACUUGUUU

Sobic.007G0428002.59.88621-11246-1266

AGAUCUAGGGAUUUGAACAAU
|||=|=||||||||||||||=
UCUCGGUCCCUAAACUUGUUC

Sobic.007G2275002.57.20521-12177-2197

AGAUCUAGGGAUUUGAACAAU
|||=|=||||||||||||||=
UCUCGGUCCCUAAACUUGUUC

Sobic.003G3859003.017.41121-13067-3087

AGAUCUAGGGAUUUGAACAAU
|=|||=|*||||||||||||=
UUUAGGUACCUAAACUUGUUC

Sobic.006G1221002.58.85221-14491-4511

AGAUCUAGGGAUUUGAACAAU
|||=*=|||||||||||||||
UCUCAGUCCCUAAACUUGUUA

Sobic.003G1871003.013.4821-11090-1110

AGAUCUAGGGAUUUGAACAAU
||*=||||||||||||||||*
UCCCGAUCCCUAAACUUGUUU

Sobic.004G2142003.016.21621-1796-816

AGAUCUAGGGAUUUGAACAAU
|||||||*|*|||==||||||
UCUAGAUGCAUAAGUUUGUUA

Sobic.009G0838003.020.521-1735-755

AGAUCUAGGGAUUUGAACAAU
|=|*||*||||=|||||||||
UUUUGAACCCUGAACUUGUUA

Sobic.010G0010003.011.7621-13225-3245

AGAUCUAGGGAUUUGAACAAU
||*||||=|=||*||||||||
UCAAGAUUCUUAUACUUGUUA

Sobic.003G2561003.015.82121-13042-3062

AGAUCUAGGGAUUUGAACAAU
|||=|=*|=||||||||||||
UCUGGCCCUCUAAACUUGUUA

Sobic.004G0850003.015.30321-13172-3192

AGAUCUAGGGAUUUGAACAAU
|||*|||||=|*||||||||=
UCUUGAUCCUUUAACUUGUUG

Sobic.010G1006003.018.46220-11084-1103

GAUCUAGGGAUUUGAACAAU
|*=|||=|=|=|||||||||
CCGGAUUCUUGAACUUGUUA

Sobic.001G4619003.019.01720-11368-1387

GAUCUAGGGAUUUGAACAAU
|||||*||=|=||=||||||
CUAGACCCUUCAAUUUGUUA


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

All copyright are reserved by Prof. Zhen Su's lab at China Agricultural University | 2015 IE 10 Above and Chrome are suggested For suggestions,please contact web Administrator Tian Tian