Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr022374510823745131+
precursorchr022374504723745132+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
GUUUUUCUCGCCGGGUGAGAAGGC
>precursor_sequence
UGUUAAUUCUCACUUGGGCGACGGAAAGGCCACCGUGUAUGGAUGGGGGUGGGGGUUCGGGGUUUUUCUCGCCGGGUGAGAAGGCA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.005G1822003.019.26523-1384-406

GGAAGAGUGGGCCGCUCUUUUUG
=|*|=|||*||=|||||||||=|
UCGUUUCAGCCUGCGAGAAAAGC


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

All copyright are reserved by Prof. Zhen Su's lab at China Agricultural University | 2015 IE 10 Above and Chrome are suggested For suggestions,please contact web Administrator Tian Tian