Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr0588713278871350-
precursorchr0588710578871376-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
GGGCCCAAAUAGCAAGUGUUGUGA
>precursor_sequence
CUGGACAUGGAUGUAUAGGUAGUAGUGGGCCCAAAUAGCAAGUGUUGUGAGAAGGAGUAAAAAAGAGAAGAUAUUUUAGAGACAAGUAUGAAACAA
CUUAUUGAAUAACUUGGCUUUUAUCACGUGACUUAUAGCCAAGCACUUGGCUCUAUUAGAGCAAGAUCAAUAAUAGAGCCAAGUGUUUGGCUAUAA
GUUAAGUGAUUAGAGCCAAGUUAUACAAUAAGUUGUCUCAUACUUGUCUCUAAAAUAUCUUCUAUUUCUUAUUCCUUCUCACAACACUUGCUAUUU
GGGCCCACUACUACUUAUGGAUCCGUGCUCAG

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.009G1355000.58.83424-13010-3033

AGUGUUGUGAACGAUAAACCCGGG
|||||||||||||||||||||=||
UCACAACACUUGCUAUUUGGGUCC

Sobic.008G1593002.05.95924-1910-933

AGUGUUGUGAACGAUAAACCCGGG
||||||||||||=||||||*||||
UCACAACACUUGUUAUUUGAGCCC

Sobic.002G2056002.06.83224-128-51

AGUGUUGUGAACGAUAAACCCGGG
||||||=|=|||||*|||||||||
UCACAAUAUUUGCUUUUUGGGCCC

Sobic.002G1353002.520.78722-1606-627

UGUUGUGAACGAUAAACCCGGG
=|||=||**|||||||||||||
GCAAUACAGGCUAUUUGGGCCC


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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