Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr104017152640171549+
precursorchr104017139840171563+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
GAUUAGUCACGAUUAGUCGUCCGA
>precursor_sequence
UCCUUAGCCACCCAUAUUUUCAGAUCGGACGACUAAUCGCGAUUAAUUGUGAUUAGUCAUCCUUAUCGUAACUGCGUGCUUGAUAUGUUUCGUCGA
UUCGAUCAGGUCGAUCAGAAACCUUAUCGUCCGAUUAGUCACGAUUAGUCGUCCGAUAAGUGUAGCAGGA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.003G1931000.015.81924-11412-1435

AGCCUGCUGAUUAGCACUGAUUAG
||||||||||||||||||||||||
UCGGACGACUAAUCGUGACUAAUC

Sobic.007G2022002.024.76322-1700-721

CCUGCUGAUUAGCACUGAUUAG
||||||=||||||*||=|||||
GGACGAUUAAUCGCGAUUAAUC

Sobic.008G1285002.023.01424-1531-554

AGCCUGCUGAUUAGCACUGAUUAG
|||||||||||||||*||=||=||
UCGGACGACUAAUCGCGAUUAGUC

Sobic.003G1712002.520.64422-1708-729

CCUGCUGAUUAGCACUGAUUAG
|||=||=|||||||||=||||*
GGAUGAUUAAUCGUGAUUAAUA

Sobic.002G1918002.018.7324-14265-4288

AGCCUGCUGAUUAGCACUGAUUAG
|||==|||=|||||||||=|||||
UCGUCCGAUUAAUCGUGAUUAAUC

Sobic.001G2465002.022.74222-1553-574

CCUGCUGAUUAGCACUGAUUAG
||||||=||||||*||=|||||
GGACGAUUAAUCGCGAUUAAUC

Sobic.008G0173001.024.55120-137-56

UGCUGAUUAGCACUGAUUAG
=|||=|||||||||||||||
GCGAUUAAUCGUGACUAAUC

Sobic.003G1044002.017.9220-1652-671

UGCUGAUUAGCACUGAUUAG
=|||||||||||||=||=||
CCGACUAAUCGUGAUUAGUC

Sobic.006G1161003.021.8124-12355-2378

AGCCUGCUGAUUAGCACUGAUUAG
|||==|||=||||||*||=|||||
UCGUCCGAUUAAUCGCGAUUAAUC

Sobic.004G0245003.018.15320-12347-2366

UGCUGAUUAGCACUGAUUAG
|||=|*||||||*|||||||
ACGCCGAAUCGUAACUAAUC


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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