Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr0470997847099804-
precursorchr0470996137099833-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
CUCCGUCCUAAUAUAUAAGGC
>precursor_sequence
UCAUUUUUGUCUUGUAGUAGACAUACUCCCUCCGUCCUAAUAUAUAAGGCGUAACCACUUUUUGUUCAUAUCUCAUAAUAUAAGGCGUGCUCUCUC
ACAAACAUUAAUGUAGCACUAUUAGUGCUGAGAGGGAGAGAAUUAAAUACGUUCUUGGUCUUUGAAUCAAAGGGUACGCCUUAUAUACUAGGACGG
AGGGAGUAUAUGCUAAAGAUGAGCUAUGA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.007G1465002.013.4320-117-36

GGAAUAUAUAAUCCUGCCUC
=||||||||||||||=|||=
UCUUAUAUAUUAGGAUGGAU

Sobic.002G0616002.520.42821-14808-4828

CGGAAUAUAUAAUCCUGCCUC
||||||||||*||||||||=*
GCCUUAUAUACUAGGACGGGA

Sobic.002G0616002.520.42821-14808-4828

CGGAAUAUAUAAUCCUGCCUC
||||||||||*||||||||=*
GCCUUAUAUACUAGGACGGGA

Sobic.007G1831002.518.820-11096-1115

GGAAUAUAUAAUCCUGCCUC
*|||||||*||||||=||||
GCUUAUAUUUUAGGAUGGAG

Sobic.010G2307003.016.15220-11925-1944

GGAAUAUAUAAUCCUGCCUC
|=||||||*||||||=|||=
CUUUAUAUUUUAGGAUGGAU

Sobic.002G1897003.015.50120-12053-2071

GGAAUAUAUAAUCCUGCCUC
|=||||||*||||||=||||
CUUUAUAU-UUAGGAUGGAG

Sobic.002G1897003.015.50120-12667-2685

GGAAUAUAUAAUCCUGCCUC
|=||||||*||||||=||||
CUUUAUAU-UUAGGAUGGAG


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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