Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr0780929018092921+
precursorchr0780928258092932+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
CUAGCAUGUUCCUCCUAAGAG
>precursor_sequence
GAAGAGCUAUUCUUUGUUCUUGGGAGGAGCAUGCUAGAAAUUUUCUCAAAGUCAGUCCUUGACUUUCAGAAAGUUCCUAGCAUGUUCCUCCUAAGA
GCAUGCUCUCUC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.002G2133003.018.3520-12044-2063

AGAAUCCUCCUUGUACGAUC
||||==||=|||=|||||||
UCUUGUGAUGAAUAUGCUAG


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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