Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr066115075861150781-
precursorchr066115050561150807-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
CUCCAUCCUAAAUUAUAAGACAUU
>precursor_sequence
GGCCAUGCUGUCGAACAUAUUACUCUCUCCAUCCUAAAUUAUAAGACAUUAUAAGAAUCCUAGAUAGUCAAAGUAUGACAAAUUUGACCAAAUUUA
UAUAAUAAAAUAAUAACAUUUAUGAUACUAACUAAACAUCAUUAGAUUCUUCUUUAAUUAUAUUUUAUAGUAUAUCUACUUGAUCUCAUAAGUUUU
UAUAUUUUUCUAUAAUUUUGGUUAAACUUGAGAUAAUUUGAUUCUCUAAGUUUUUUGAAAUGCCUUAUAAUUUGGGAUGGAGAGAGCUUUUUUUAU
UGUUAAAGUAGUGCC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.002G0054000.514.72524-11759-1782

UUACAGAAUAUUAAAUCCUACCUC
|||||||||||||||=||||||||
AAUGUCUUAUAAUUUGGGAUGGAG

Sobic.001G2791002.013.46724-11740-1763

UUACAGAAUAUUAAAUCCUACCUC
|||||||||||||||=|*||||||
AAUGUCUUAUAAUUUGGAAUGGAG

Sobic.001G2791002.013.46724-11743-1766

UUACAGAAUAUUAAAUCCUACCUC
|||||||||||||||=|*||||||
AAUGUCUUAUAAUUUGGAAUGGAG

Sobic.001G2791002.013.46724-11743-1766

UUACAGAAUAUUAAAUCCUACCUC
|||||||||||||||=|*||||||
AAUGUCUUAUAAUUUGGAAUGGAG

Sobic.001G2791002.013.46724-11746-1769

UUACAGAAUAUUAAAUCCUACCUC
|||||||||||||||=|*||||||
AAUGUCUUAUAAUUUGGAAUGGAG

Sobic.006G2026001.514.5924-11634-1657

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=||||||||
AAUGACUUAUAAUUUGGGAUGGAG

Sobic.001G4697001.515.37824-1533-556

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=||||||||
AAUGACUUAUAAUUUGGGAUGGAG

Sobic.006G2234001.511.73824-1265-288

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=||||||||
AAUGACUUAUAAUUUGGGAUGGAG

Sobic.004G2165002.013.68724-12732-2755

UUACAGAAUAUUAAAUCCUACCUC
|||||||||||||||=|*||||||
AAUGUCUUAUAAUUUGGAAUGGAG

Sobic.003G0692001.514.77524-12161-2184

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=||||||||
AAUGACUUAUAAUUUGGGAUGGAG

Sobic.002G0746001.523.85624-13280-3303

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=||||||||
AAUGACUUAUAAUUUGGGAUGGAG

Sobic.004G0555001.518.18624-11774-1797

UUACAGAAUAUUAAAUCCUACCUC
|||||||||||||||=*|||||||
AAUGUCUUAUAAUUUGAGAUGGAG

Sobic.009G1622001.012.04624-140-63

UUACAGAAUAUUAAAUCCUACCUC
||*||=|||||||||=||||||||
AACGUUUUAUAAUUUGGGAUGGAG

Sobic.010G1638001.518.0224-11327-1350

UUACAGAAUAUUAAAUCCUACCUC
||*||||||||||||=|||||||=
AACGUCUUAUAAUUUGGGAUGGAU

Sobic.008G1592002.515.08924-11342-1365

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||||*||||||
AAUGACUUAUAAUUUAGAAUGGAG

Sobic.007G0009002.018.78324-12961-2984

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||*||||||||
AAUGACUUAUAAUUUUGGAUGGAG

Sobic.007G0884002.016.80524-17999-8022

UUACAGAAUAUUAAAUCCUACCUC
||||*|||||||||||*|||||||
AAUGACUUAUAAUUUACGAUGGAG

Sobic.002G1697002.517.124-112887-12910

UUACAGAAUAUUAAAUCCUACCUC
||||*|||||||||||||||*|||
AAUGACUUAUAAUUUAGGAUAGAG

Sobic.009G1098002.520.83424-1749-772

UUACAGAAUAUUAAAUCCUACCUC
||||*||||*|||||=||||||||
AAUGACUUAAAAUUUGGGAUGGAG

Sobic.002G3719002.519.42224-11459-1482

UUACAGAAUAUUAAAUCCUACCUC
||||*||||*|||||=||||||||
AAUGACUUACAAUUUGGGAUGGAG

Sobic.004G2244002.015.43424-110-33

UUACAGAAUAUUAAAUCCUACCUC
|*|||||||||||||=|*||||||
AUUGUCUUAUAAUUUGGAAUGGAG

Sobic.004G2354002.016.69324-11729-1752

UUACAGAAUAUUAAAUCCUACCUC
||*||||||||||||=||||||=|
AACGUCUUAUAAUUUGGGAUGGCG

Sobic.005G0759002.519.07724-11186-1209

UUACAGAAUAUUAAAUCCUACCUC
||||*||||*|||||=||||||||
AAUGACUUACAAUUUGGGAUGGAG

Sobic.004G3478003.016.50124-12307-2330

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=|||||*||
AAUGACUUAUAAUUUGGGAUGAAG

Sobic.004G3478003.016.50124-12462-2485

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=|||||*||
AAUGACUUAUAAUUUGGGAUGAAG

Sobic.004G3478003.016.50124-12487-2510

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=|||||*||
AAUGACUUAUAAUUUGGGAUGAAG

Sobic.004G3478003.016.50124-12530-2553

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=|||||*||
AAUGACUUAUAAUUUGGGAUGAAG

Sobic.006G0033003.012.90324-12278-2301

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=|||*||||
AAUGACUUAUAAUUUGGGACGGAG

Sobic.009G2539003.011.56124-11975-1998

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=|*||||||
AAUGACUUAUAAUUUGGCAUGGAG

Sobic.005G2094003.014.98724-13027-3050

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=|*||||||
AAUGACUUAUAAUUUGGAAUGGAG

Sobic.003G2196003.016.60224-13573-3596

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=|||*||||
AAUGACUUAUAAUUUGGGACGGAG

Sobic.006G2154002.515.70724-13487-3510

UUACAGAAUAUUAAAUCCUACCUC
||||*||||*|||||=||||||||
AAUGACUUACAAUUUGGGAUGGAG

Sobic.009G2361002.522.67724-13409-3432

UUACAGAAUAUUAAAUCCUACCUC
||||*||||*|||||=||||||||
AAUGACUUACAAUUUGGGAUGGAG

Sobic.008G1422003.021.11624-1186-209

UUACAGAAUAUUAAAUCCUACCUC
||||*||||||||||=|*||||||
AAUGACUUAUAAUUUGGAAUGGAG

Sobic.008G0887002.515.68924-12078-2101

UUACAGAAUAUUAAAUCCUACCUC
||||*|||=|||||||=|||||||
AAUGACUUGUAAUUUAUGAUGGAG

Sobic.003G3782002.513.1924-11067-1090

UUACAGAAUAUUAAAUCCUACCUC
|||*|||||||||||||||||*|*
AAUAUCUUAUAAUUUAGGAUGAAA

Sobic.003G1241003.014.1324-163-86

UUACAGAAUAUUAAAUCCUACCUC
|=|||*|||||||||=|*||||||
AGUGUAUUAUAAUUUGGAAUGGAG

Sobic.003G1241003.014.1324-163-86

UUACAGAAUAUUAAAUCCUACCUC
|=|||*|||||||||=|*||||||
AGUGUAUUAUAAUUUGGAAUGGAG

Sobic.001G4136002.515.35224-1517-540

UUACAGAAUAUUAAAUCCUACCUC
||*||||||||=|||=|||||*||
AACGUCUUAUAGUUUGGGAUGAAG

Sobic.009G1316002.523.97824-12995-3018

UUACAGAAUAUUAAAUCCUACCUC
||*||=|||||||||=|*||||||
AAAGUUUUAUAAUUUGGAAUGGAG

Sobic.008G1891002.511.99424-11369-1392

UUACAGAAUAUUAAAUCCUACCUC
|=|*|||||||||||||*|||||=
AGUAUCUUAUAAUUUAGAAUGGAU

Sobic.005G0636003.018.42524-12512-2535

UUACAGAAUAUUAAAUCCUACCUC
||*||||||||||||=|*|||||=
AACGUCUUAUAAUUUGGAAUGGAU

Sobic.005G0636003.018.42524-12847-2870

UUACAGAAUAUUAAAUCCUACCUC
||*||||||||||||=|*|||||=
AACGUCUUAUAAUUUGGAAUGGAU

Sobic.005G0636003.018.42524-12856-2879

UUACAGAAUAUUAAAUCCUACCUC
||*||||||||||||=|*|||||=
AACGUCUUAUAAUUUGGAAUGGAU

Sobic.005G0636003.018.42524-13191-3214

UUACAGAAUAUUAAAUCCUACCUC
||*||||||||||||=|*|||||=
AACGUCUUAUAAUUUGGAAUGGAU

Sobic.008G0526003.012.10224-1310-333

UUACAGAAUAUUAAAUCCUACCUC
|||*|||||||||||=|*|||||=
AAUAUCUUAUAAUUUGGAAUGGAU

Sobic.008G0526003.012.10224-1310-333

UUACAGAAUAUUAAAUCCUACCUC
|||*|||||||||||=|*|||||=
AAUAUCUUAUAAUUUGGAAUGGAU

Sobic.001G0340003.023.45624-11827-1850

UUACAGAAUAUUAAAUCCUACCUC
||||*||||*|||||*||||||||
AAUGACUUACAAUUUUGGAUGGAG

Sobic.010G0952001.516.49124-11276-1299

UUACAGAAUAUUAAAUCCUACCUC
||**|||||||||||||*||||||
AACAUCUUAUAAUUUAGAAUGGAG

Sobic.010G0952001.516.49124-11376-1399

UUACAGAAUAUUAAAUCCUACCUC
||**|||||||||||||*||||||
AACAUCUUAUAAUUUAGAAUGGAG

Sobic.010G0952001.516.49124-11389-1412

UUACAGAAUAUUAAAUCCUACCUC
||**|||||||||||||*||||||
AACAUCUUAUAAUUUAGAAUGGAG

Sobic.010G0952001.516.49124-11497-1520

UUACAGAAUAUUAAAUCCUACCUC
||**|||||||||||||*||||||
AACAUCUUAUAAUUUAGAAUGGAG

Sobic.007G1357002.516.33524-114-37

UUACAGAAUAUUAAAUCCUACCUC
||*|*||||*|||||=||||||||
AACGACUUACAAUUUGGGAUGGAG

Sobic.009G0875002.517.45324-1451-474

UUACAGAAUAUUAAAUCCUACCUC
||*|*||||*|||||=||||||||
AACGACUUACAAUUUGGGAUGGAG

Sobic.001G3366002.517.46724-11603-1626

UUACAGAAUAUUAAAUCCUACCUC
||*|*||||*|||||=||||||||
AACGACUUACAAUUUGGGAUGGAG

Sobic.009G0228002.517.08424-11880-1903

UUACAGAAUAUUAAAUCCUACCUC
||*|*||||*|||||=||||||||
AACGACUUACAAUUUGGGAUGGAG

Sobic.006G0299003.010.81524-1374-397

UUACAGAAUAUUAAAUCCUACCUC
|||**||||||||||=|||*||||
AAUAACUUAUAAUUUGGGACGGAG

Sobic.004G0397003.013.43524-13570-3593

UUACAGAAUAUUAAAUCCUACCUC
|||**||||||||||=|*||||||
AAUAACUUAUAAUUUGGAAUGGAG

Sobic.009G1404003.013.68524-13075-3098

UUACAGAAUAUUAAAUCCUACCUC
||*|||||||*||||=|||||*||
AACGUCUUAUUAUUUGGGAUGAAG

Sobic.001G2218003.017.89524-14347-4370

UUACAGAAUAUUAAAUCCUACCUC
||*|*=||||||||||||||*|||
AACGGUUUAUAAUUUAGGAUAGAG

Sobic.001G2218003.017.89524-14575-4598

UUACAGAAUAUUAAAUCCUACCUC
||*|*=||||||||||||||*|||
AACGGUUUAUAAUUUAGGAUAGAG

Sobic.009G0782003.017.39624-19440-9463

UUACAGAAUAUUAAAUCCUACCUC
|=|||||*|||||||=|*||||||
ACUGUCUGAUAAUUUGGAAUGGAG

Sobic.010G0874001.517.69922-11992-2013

ACAGAAUAUUAAAUCCUACCUC
|=||||=|||||||=|||||||
UUUCUUGUAAUUUAUGAUGGAG

Sobic.003G4437003.013.04724-11502-1525

UUACAGAAUAUUAAAUCCUACCUC
||*|*||||*|||||||||||||=
AACGACUUACAAUUUAGGAUGGAU

Sobic.006G2265003.014.53820-1165-184

AGAAUAUUAAAUCCUACCUC
|=||||||||||||||||*=
UUUUAUAAUUUAGGAUGGUU

Sobic.002G2752002.510.67324-12055-2078

UUACAGAAUAUUAAAUCCUACCUC
|=|*|=|||||||||=|||*||||
ACUAUUUUAUAAUUUGGGACGGAG

Sobic.007G1831002.018.820-11096-1115

AGAAUAUUAAAUCCUACCUC
*||||||*||||||||||||
GCUUAUAUUUUAGGAUGGAG

Sobic.002G0263002.518.29124-12629-2652

UUACAGAAUAUUAAAUCCUACCUC
||**|*|||||||||=|||||||*
AACAUGUUAUAAUUUGGGAUGGAA

Sobic.002G0263002.518.29124-12906-2929

UUACAGAAUAUUAAAUCCUACCUC
||**|*|||||||||=|||||||*
AACAUGUUAUAAUUUGGGAUGGAA

Sobic.001G3428003.08.79624-13575-3598

UUACAGAAUAUUAAAUCCUACCUC
||**|||||||||||=|*|||||=
AACAUCUUAUAAUUUGGAAUGGAU

Sobic.004G2048003.021.44424-11902-1925

UUACAGAAUAUUAAAUCCUACCUC
||**|||||||||||||||**|||
AAACUCUUAUAAUUUAGGACAGAG

Sobic.002G0419002.511.28624-12371-2394

UUACAGAAUAUUAAAUCCUACCUC
||**|||||||*|||||*||||||
AACAUCUUAUAUUUUAGAAUGGAG

Sobic.010G0099003.016.37120-1687-706

AGAAUAUUAAAUCCUACCUC
|||||||||||=|||*|||*
UCUUAUAAUUUGGGACGGAA

Sobic.001G2709003.018.93124-11669-1692

UUACAGAAUAUUAAAUCCUACCUC
||**|=|||||||||*|*||||||
AACCUUUUAUAAUUUUGAAUGGAG

Sobic.001G2709003.018.93124-11917-1940

UUACAGAAUAUUAAAUCCUACCUC
||**|=|||||||||*|*||||||
AACCUUUUAUAAUUUUGAAUGGAG

Sobic.004G0292002.518.61220-1603-622

AGAAUAUUAAAUCCUACCUC
||||||||**|=||||||||
UCUUAUAAGAUGGGAUGGAG

Sobic.007G1465003.013.4324-113-36

UUACAGAAUAUUAAAUCCUACCUC
||**|||||||**||||||||||=
AACAUCUUAUAUAUUAGGAUGGAU

Sobic.003G1963002.520.22820-1949-968

AGAAUAUUAAAUCCUACCUC
||||||==|||*||||||||
UCUUAUGCUUUUGGAUGGAG


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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