Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr1064517976451817+
precursorchr1064515296451847+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
ACAAGUUUCGUGAUUUUUGGA
>precursor_sequence
GUAUUUAUAAAUUAUAAAAAAUCCAAACGACGUCCGAAAAUCACGAAACUUGUCGAUGUGUCUUGGUAUCCCAUGUGGAGACUAUGAUAAAAAUUU
UAGGAAGUUUCGAGCAAGUAGUGAUGUCCGAUACUUAAAACCCAGACAUCUCCACUUGUCAAAGUUUUGUGAUCACAUGUGGAGGAGGAUGGCUUU
UAAGCAUUCGAAGUCACUACAUGAAACUUCCUCAAAUUUUUAUCAUAGUCUCCACAUGGGAUACCAAGACACAUCGACAAGUUUCGUGAUUUUUGG
ACGUCGUUCGGAUUUUUUAUAAUUUAAAUAC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.003G1765002.015.0821-11460-1480

AGGUUUUUAGUGCUUUGAACA
|=|||||=||||||||||||*
UUCAAAAGUCACGAAACUUGG

Sobic.004G3161002.07.64520-1570-589

GGUUUUUAGUGCUUUGAACA
|*||||||=|=|||||||||
CAAAAAAUUAUGAAACUUGU

Sobic.004G1992002.016.24420-11042-1061

GGUUUUUAGUGCUUUGAACA
|||||==||||=||||||||
CCAAAGGUCACUAAACUUGU

Sobic.004G1992002.016.24420-11042-1061

GGUUUUUAGUGCUUUGAACA
|||||==||||=||||||||
CCAAAGGUCACUAAACUUGU

Sobic.005G1060003.016.63321-1530-550

AGGUUUUUAGUGCUUUGAACA
||*=|||||=||||||||||*
UCGGAAAAUUACGAAACUUGA

Sobic.007G0808003.019.16320-11363-1382

GGUUUUUAGUGCUUUGAACA
|||=|=|||||=|||||||*
CCAGAGAUCACUAAACUUGA

Sobic.001G3049002.511.80520-12625-2644

GGUUUUUAGUGCUUUGAACA
|||*|=||||=|||||||||
CCAUACAUCAUGAAACUUGU

Sobic.003G3637003.017.4321-11674-1694

AGGUUUUUAGUGCUUUGAACA
||||||*=|||*|||||||||
UCCAAAUCUCAAGAAACUUGU

Sobic.003G3637003.017.4321-11724-1744

AGGUUUUUAGUGCUUUGAACA
||||||*=|||*|||||||||
UCCAAAUCUCAAGAAACUUGU


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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