Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr051098445710984480+
precursorchr051098427910984505+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
AAAAUUAUCGUAAAUAGAGGUGGC
>precursor_sequence
UAGCUACAAAAUAACUUAUUUUGUAGCCACUUUGAGUUACGAUAAUUAUUAUAUUAAUUUAUAAGAUUAUAGUAACUCUUUACUAAGUGGUUUACU
AUAACAUUAUGGUAAAUAUCCUCAUGUGUUAUAGUAUCAAACUAUCGUAAAUAUGUAUACAUAUUAUCGUAAAUUAGUAUAUAAAAUUAUCGUAAA
UAGAGGUGGCUACAGAAUAAAUUAUUUUGUAGUUA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.002G0627001.09.42824-13877-3900

CGGUGGAGAUAAAUGCUAUUAAAA
||||||||*|||||||||||||||
GCCACCUCCAUUUACGAUAAUUUU

Sobic.002G0627001.09.42824-13874-3897

CGGUGGAGAUAAAUGCUAUUAAAA
||||||||*|||||||||||||||
GCCACCUCCAUUUACGAUAAUUUU

Sobic.005G2190001.510.53624-153-76

CGGUGGAGAUAAAUGCUAUUAAAA
||||=|||*|||||||||||||||
GCCAUCUCCAUUUACGAUAAUUUU

Sobic.004G1450003.016.40422-11344-1365

GUGGAGAUAAAUGCUAUUAAAA
=||=|||*|||=*|||||||||
UACUUCUUUUUGAGAUAAUUUU

Sobic.001G4631003.018.26823-11468-1490

GGUGGAGAUAAAUGCUAUUAAAA
||**=||||*|||=|||||||||
CCUGUUCUACUUAUGAUAAUUUU

Sobic.003G0999003.015.95420-168-87

GGAGAUAAAUGCUAUUAAAA
==|=||||||=|=|=|||||
UUUUUAUUUAUGGUGAUUUU

Sobic.001G3747003.017.85521-1678-698

UGGAGAUAAAUGCUAUUAAAA
=|=*||||||==|||=|||||
GCUGCUAUUUGUGAUGAUUUU

Sobic.007G1424002.510.72320-1621-640

GGAGAUAAAUGCUAUUAAAA
|||||||||||**|=|||||
CCUCUAUUUACCUUGAUUUU

Sobic.002G4172003.014.91820-13071-3090

GGAGAUAAAUGCUAUUAAAA
|*|=|=||||=|=|||||||
CGUUUGUUUAUGGUAAUUUU

Sobic.004G0892003.021.05521-11362-1382

UGGAGAUAAAUGCUAUUAAAA
=|=|||*|||=||=|||||||
GCUUCUUUUUCCGGUAAUUUU


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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