Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr04316125316148+
precursorchr04316097316334+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UAGCCACUUUGAGUUACGAUAAUU
>precursor_sequence
GUAGCUGGCUACAAAAUAUGUUAUUCUGUAGCCACUUUGAGUUACGAUAAUUACUAUAUUAAUUUACAAGAUUAUAUUAACUCCUUACUAAGUGGU
UUACUAUAACAUUACGGUAAAUAUCCUCAUGUGUUAUAGUAACCCAACUAUCGUAAAUACAUAUACAUAUUAUCGUAAAUUAGUAUAUAAAAUUAU
CGUAAAUAGAGGUGGCUAUAGAAUAACAUAUUUUGUAGCUAGCUAC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.006G0222000.517.41824-15513-5536

UUAAUAGCAUUGAGUUUCACCGAU
||||||=|||||||||||||||||
AAUUAUUGUAACUCAAAGUGGCUA

Sobic.002G0627000.019.97323-14016-4038

UAAUAGCAUUGAGUUUCACCGAU
|||||||||||||||||||||||
AUUAUCGUAACUCAAAGUGGCUA

Sobic.002G0627000.018.52123-14013-4035

UAAUAGCAUUGAGUUUCACCGAU
|||||||||||||||||||||||
AUUAUCGUAACUCAAAGUGGCUA

Sobic.004G0892001.517.48724-13381-3404

UUAAUAGCAUUGAGUUUCACCGAU
||||||||||||||||||||*|||
AAUUAUCGUAACUCAAAGUGACUA

Sobic.005G2190003.012.53724-1305-328

UUAAUAGCAUUGAGUUUCACCGAU
|||||||||||*|*=|=|||||||
AAUUAUCGUAAAUGGAGGUGGCUA

Sobic.K0334003.016.3523-1114-136

UAAUAGCAUUGAGUUUCACCGAU
||*||*||||*|*||||||||||
AUAAUGGUAAAUGAAAGUGGCUA

Sobic.K0335003.016.3523-13148-3170

UAAUAGCAUUGAGUUUCACCGAU
||*||*||||*|*||||||||||
AUAAUGGUAAAUGAAAGUGGCUA

Sobic.005G1179003.021.73923-13492-3515

UAAUAGCAUUGAGUU-UCACCGAU
||**||||=||||||*|||||||=
AUGUUCGUGACUCAAGAGUGGCUG

Sobic.005G1428003.013.69320-11918-1936

UAGCAUUGAGUUUCACCGAU
*|||||*|||||||||||||
UUCGUA-CUCAAAGUGGCUA


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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