miRNA detail annotation

Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image

2.Location informaition

Type	Chromosome	Start	End	Strand	SNP(TSS up 2kb)	SNP(gene body)
mature	chr09	4869959	4869979	+
precursor	chr09	4869845	4870008	+	more details in SorGSD	more details in SorGSD

3.miRNA sequence

>mature_sequence

UAUCUAGAAAAGCUAAAACGU

>precursor_sequence

UAUUUUACUACCUCCAUUCCUAUUUAUAAGAUGUUUUGGGUUUUCUAGAUAUAUAUCUCUUGCUAUGUACUUGGAUAUAUACAUUACGUCUAGAAA
CAUAGUAAAACCAGUGUGUAUCUAGAAAAGCUAAAACGUGUAUAAUUUGAAAUAGAGGGAGUACUAUA

4.Target gene

Target gene	Expectation	UPE	miRNA_aligned start-end	Target_aligned start-end	Aligned Fragment: miRNA-Target
Sobic.001G193100	0.5	19.78	21-1	2220-2240	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| AUGUUUUAGCUUUUCUAGAUA
Sobic.001G341500	1.0	9.171	21-1	1212-1232	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\| AUGUUUUGGCUUUUCUAGAUA
Sobic.010G240700	1.0	18.427	21-1	3774-3794	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\| AUGUUUUAGCUUUUCUAGGUA
Sobic.010G010000	1.5	20.701	21-1	1804-1824	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|= AUGUUUUAGUUUUUCUAGAUG
Sobic.003G382500	1.5	12.073	21-1	2277-2297	UGCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\| ACGUUUUAGCUUUUCUUGAUA
Sobic.003G382500	1.5	12.073	21-1	2280-2300	UGCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\| ACGUUUUAGCUUUUCUUGAUA
Sobic.001G124100	1.5	8.887	21-1	3323-3343	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|=\|=\|\|\|\|\|\|\|\|\|\|\| AUGUUUUGGUUUUUCUAGAUA
Sobic.002G166500	1.0	20.648	20-1	1504-1523	GCAAAAUCGAAAAGAUCUAU =\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\| UGUUUUAGCUUUUCUAGGUA
Sobic.002G166500	1.0	20.648	20-1	1725-1744	GCAAAAUCGAAAAGAUCUAU =\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\| UGUUUUAGCUUUUCUAGGUA
Sobic.001G255900	1.5	19.906	21-1	1572-1592	UGCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|\|=\|\|*\|\|\|\|\|\|\|\|\|\| ACGUUUUGGCCUUUCUAGAUA
Sobic.008G089900	1.5	12.637	21-1	1434-1454	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|\| AUGUUUUACCUUUUCUAGAUA
Sobic.001G279100	1.5	8.185	21-1	1609-1629	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\| AUGUUUUAUCUUUUCUAGAUA
Sobic.001G279100	1.5	8.185	21-1	1612-1632	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\| AUGUUUUAUCUUUUCUAGAUA
Sobic.001G279100	1.5	8.185	21-1	1612-1632	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\| AUGUUUUAUCUUUUCUAGAUA
Sobic.001G279100	1.5	8.185	21-1	1615-1635	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\| AUGUUUUAUCUUUUCUAGAUA
Sobic.002G275200	1.5	10.507	21-1	2020-2040	UGCAAAAUCGAAAAGAUCUAU \|*\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\| AGGUUUUGGCUUUUCUAGAUA
Sobic.004G290400	1.5	16.793	21-1	2543-2563	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|\| AUGUUUUAACUUUUCUAGAUA
Sobic.003G424300	2.5	8.309	21-1	1470-1490	UGCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| ACGUUUUAGCUUUUCUAAAUU
Sobic.007G123000	1.5	12.717	20-1	1459-1478	GCAAAAUCGAAAAGAUCUAU =\|\|\|\|\|=\|=\|\|\|\|\|\|\|\|\|\|\| UGUUUUGGUUUUUCUAGAUA
Sobic.007G053400	1.0	8.606	20-1	1305-1324	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|\| CGUUUUACCUUUUCUAGAUA
Sobic.001G214400	2.0	15.819	21-1	144-164	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|=\|*\|\|\|\|\|\|\|\|\|\|\| AUGUUUUGGGUUUUCUAGAUA
Sobic.004G348200	2.0	13.443	21-1	641-661	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|\|*\|\|\|\|\|=\|\|\|\|\|\| AUGUUUUAACUUUUUUAGAUA
Sobic.002G266800	2.0	14.887	20-1	655-674	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|=\|\|\|\|\|\|*\|\|\|\|\|\| CGUUUUGGCUUUUGUAGAUA
Sobic.002G191800	1.5	11.547	20-1	2329-2348	GCAAAAUCGAAAAGAUCUAU \|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|\|=\|\| CGUUCUAGCUUUUCUAGGUA
Sobic.003G177700	2.5	8.733	20-1	1382-1401	GCAAAAUCGAAAAGAUCUAU =*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|= UAUUUUAGCUUUUCUAGAUG
Sobic.004G269700	2.5	10.021	20-1	1701-1720	GCAAAAUCGAAAAGAUCUAU **\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\| AAUUUUAGUUUUUCUAGAUA
Sobic.002G005400	2.5	15.157	21-1	267-287	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|=*=\|\|\|\|\|\|\|\|\|\|\| AUGUUUUGAUUUUUCUAGAUA
Sobic.009G033700	2.5	24.637	21-1	1786-1806	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|=*\|\|\|\|\|=\|\|\|\|\|\| AUGUUUUGACUUUUUUAGAUA
Sobic.003G258300	2.0	24.698	20-1	1362-1381	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|=*\|\|\|\|\|=\|\|\|\|\|\| CGUUUUGACUUUUUUAGAUA
Sobic.003G258300	2.0	24.698	20-1	1367-1386	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|=*\|\|\|\|\|=\|\|\|\|\|\| CGUUUUGACUUUUUUAGAUA
Sobic.003G258300	2.0	24.698	20-1	1459-1478	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|=*\|\|\|\|\|=\|\|\|\|\|\| CGUUUUGACUUUUUUAGAUA
Sobic.003G258300	2.0	24.698	20-1	1487-1506	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|=*\|\|\|\|\|=\|\|\|\|\|\| CGUUUUGACUUUUUUAGAUA
Sobic.003G258300	2.0	24.698	20-1	1547-1566	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|=*\|\|\|\|\|=\|\|\|\|\|\| CGUUUUGACUUUUUUAGAUA
Sobic.003G258300	2.0	24.698	20-1	1552-1571	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|=*\|\|\|\|\|=\|\|\|\|\|\| CGUUUUGACUUUUUUAGAUA
Sobic.003G258300	2.0	24.698	20-1	1644-1663	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|=*\|\|\|\|\|=\|\|\|\|\|\| CGUUUUGACUUUUUUAGAUA
Sobic.003G258300	2.0	24.698	20-1	1672-1691	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|=*\|\|\|\|\|=\|\|\|\|\|\| CGUUUUGACUUUUUUAGAUA
Sobic.003G327900	2.5	10.879	20-1	1856-1875	GCAAAAUCGAAAAGAUCUAU =\|\|\|\|\|=\|\|\|\|\|\|\|\|\|=\|\|\| UGUUUUGGCUUUUCUAUAUA
Sobic.007G106800	2.0	18.617	20-1	1792-1811	GCAAAAUCGAAAAGAUCUAU =\|\|\|*\|\|\|\|\|\|\|\|\|\|\|\|=\|\| UGUUCUAGCUUUUCUAGGUA
Sobic.004G357400	2.0	19.888	20-1	1843-1862	GCAAAAUCGAAAAGAUCUAU =\|\|\|*\|=\|\|\|\|\|\|\|\|\|\|\|\|\| UGUUCUGGCUUUUCUAGAUA
Sobic.008G010300	2.5	20.158	20-1	1929-1948	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|=\|=\|\|\|\|\|*\|\|\|\|\| CGUUUUGGUUUUUCCAGAUA
Sobic.010G217700	2.0	13.291	20-1	2292-2311	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|=\|\|*\|\|\|=\|\|\|\|\|\| CGUUUUGGCAUUUUUAGAUA
Sobic.006G223900	2.0	16.885	20-1	2424-2443	GCAAAAUCGAAAAGAUCUAU =\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|=\|\| UGUUUUAGCUUGUCUAGGUA
Sobic.004G216500	3.0	9.105	21-1	2630-2650	UGCAAAAUCGAAAAGAUCUAU \|\|*\|\|\|\|=\|\|\|\|\|\|=\|\|\|\|\|= ACAUUUUGGCUUUUUUAGAUC
Sobic.006G211500	2.5	10.464	21-1	3240-3260	UGCAAAAUCGAAAAGAUCUAU =\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\| GCGUUUUGACUUUUCUAGAUU
Sobic.001G222400	2.0	21.232	20-1	3142-3161	GCAAAAUCGAAAAGAUCUAU \|\|\|\|*\|=\|=\|\|\|\|\|\|\|\|\|\|\| CGUUCUGGUUUUUCUAGAUA
Sobic.001G222400	2.0	21.232	20-1	3305-3324	GCAAAAUCGAAAAGAUCUAU \|\|\|\|*\|=\|=\|\|\|\|\|\|\|\|\|\|\| CGUUCUGGUUUUUCUAGAUA
Sobic.001G222400	2.0	21.232	20-1	3142-3161	GCAAAAUCGAAAAGAUCUAU \|\|\|\|*\|=\|=\|\|\|\|\|\|\|\|\|\|\| CGUUCUGGUUUUUCUAGAUA
Sobic.001G222400	2.0	21.232	20-1	3515-3534	GCAAAAUCGAAAAGAUCUAU \|\|\|\|*\|=\|=\|\|\|\|\|\|\|\|\|\|\| CGUUCUGGUUUUUCUAGAUA
Sobic.003G160500	3.0	6.82	21-1	1463-1483	UGCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|\|=\|*\|\|\|\|\|\|\|=\|\|\| ACGUUUUGGAUUUUCUAUAUA
Sobic.003G160500	3.0	6.82	21-1	1468-1488	UGCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|\|=\|*\|\|\|\|\|\|\|=\|\|\| ACGUUUUGGAUUUUCUAUAUA
Sobic.010G095200	2.5	21.571	21-1	1181-1201	UGCAAAAUCGAAAAGAUCUAU \|\|\|**\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\| ACGACUUGGCUUUUCUAGAUA
Sobic.009G187500	3.0	9.537	21-1	2028-2048	UGCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\| ACGUUUUGCCUUUUCUAGACA
Sobic.002G268700	3.0	15.029	21-1	2052-2072	UGCAAAAUCGAAAAGAUCUAU \|\|*\|\|\|\|=\|\|\|\|\|\|\|\|\|=\|\|\| ACAUUUUGGCUUUUCUAUAUA
Sobic.010G095200	2.5	21.571	21-1	1281-1301	UGCAAAAUCGAAAAGAUCUAU \|\|\|**\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\| ACGACUUGGCUUUUCUAGAUA
Sobic.010G095200	2.5	21.571	21-1	1294-1314	UGCAAAAUCGAAAAGAUCUAU \|\|\|**\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\| ACGACUUGGCUUUUCUAGAUA
Sobic.010G095200	2.5	21.571	21-1	1402-1422	UGCAAAAUCGAAAAGAUCUAU \|\|\|**\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\| ACGACUUGGCUUUUCUAGAUA
Sobic.010G278600	2.5	8.918	21-1	2791-2811	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| AUAUUUUAGAUUUUCUAGAUA
Sobic.009G245800	3.0	19.089	21-1	1805-1825	UGCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\| ACGUUGUGGCUUUUCGAGAUA
Sobic.003G088500	2.5	9.395	21-1	5502-5522	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| AUGCUUUUGCUUUUCUAGAUA
Sobic.007G195300	2.5	10.262	21-1	74-95	UGCAAAAUCGAAAA-GAUCUAU \|=\|\|\|\|\|\|\|=\|\|\|\|*\|\|\|\|\|\|\| AUGUUUUAGUUUUUUCUAGAUA
Sobic.007G195300	2.5	10.262	21-1	74-95	UGCAAAAUCGAAAA-GAUCUAU \|=\|\|\|\|\|\|\|=\|\|\|\|*\|\|\|\|\|\|\| AUGUUUUAGUUUUUUCUAGAUA
Sobic.007G195300	2.5	10.262	21-1	74-95	UGCAAAAUCGAAAA-GAUCUAU \|=\|\|\|\|\|\|\|=\|\|\|\|*\|\|\|\|\|\|\| AUGUUUUAGUUUUUUCUAGAUA
Sobic.007G046600	2.0	10.17	20-1	20-39	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| CGUUCUAGCAUUUCUAGAUA
Sobic.003G347100	3.0	16.501	21-1	316-336	UGCAAAAUCGAAAAGAUCUAU ==\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| GUGUUUUAGCUUUGCUAAAUA
Sobic.002G086800	3.0	19.392	21-1	208-228	UGCAAAAUCGAAAAGAUCUAU \|\|=*\|\|\|=\|\|\|\|\|\|=\|\|\|\|\|\| ACUGUUUGGCUUUUUUAGAUA
Sobic.010G136500	3.0	21.424	21-1	1555-1575	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|**=\|\|\|\|\|\|\|\|\|\|\| AUGUUUUUAUUUUUCUAGAUA
Sobic.007G212200	3.0	9.458	21-1	3433-3453	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\| AUAUUUUAAUUUUUCUAGAUA
Sobic.007G212200	3.0	9.458	21-1	3454-3474	UGCAAAAUCGAAAAGAUCUAU \|=\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\| AUAUUUUAAUUUUUCUAGAUA
Sobic.002G294500	3.0	15.631	20-1	786-805	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\| CGUUUUGGCUUCUCUAGACA
Sobic.006G189200	3.0	12.298	20-1	1031-1050	GCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\| CGUUUUAGUAUUUCUAGACA
Sobic.001G361100	3.0	11.427	20-1	355-374	GCAAAAUCGAAAAGAUCUAU =\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|*\| UGUUUUCGCUUUUCUAGAAA
Sobic.001G181100	3.0	9.759	20-1	3749-3768	GCAAAAUCGAAAAGAUCUAU =\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| UGUUUUAGCUGUUAUAGAUA
Sobic.001G205200	3.0	20.96	21-1	2501-2521	UGCAAAAUCGAAAAGAUCUAU =\|\|\|**\|\|\|\|\|\|\|\|\|\|=\|\|\|= GCGUGAUAGCUUUUCUGGAUG
Sobic.008G114300	3.0	16.381	21-1	7346-7366	UGCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\| ACGUUUGAGGUUUCCUAGAUA
Sobic.008G114300	3.0	16.381	21-1	7548-7568	UGCAAAAUCGAAAAGAUCUAU \|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\| ACGUUUGAGGUUUCCUAGAUA
Sobic.009G120600	3.0	12.603	20-1	2284-2303	GCAAAAUCGAAAAGAUCUAU =\|\|\|*\|\|==\|\|\|\|\|\|\|\|\|\|\| UGUUCUAUUUUUUCUAGAUA
Sobic.009G202900	3.0	24.798	20-1	2304-2323	GCAAAAUCGAAAAGAUCUAU =\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\| UGUUCUAGCCUUUUUAGAUA

5.Secondary structure

6.GSE32458

null

7.GSE49879

null

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