miRNA detail annotation

Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image

2.Location informaition

Type	Chromosome	Start	End	Strand	SNP(TSS up 2kb)	SNP(gene body)
mature	chr06	47318525	47318545	-
precursor	chr06	47318465	47318656	-	more details in SorGSD	more details in SorGSD

3.miRNA sequence

>mature_sequence

ACUAUGUAUCUAGAAAAGCUA

>precursor_sequence

ACAGGUUUAAUCAAAUUAUCUAGUAUGUACUCCCUCUAUUCCAAAUUGUAAGUCAUUUAAACUUUUCUAGGUACAUAGCUUUUGCUAUGCAUCUAU
AGCUACAUAGUUUUUACUAUGUAUCUAGAAAAGCUAGAACAAAUUACAAUUUCAAACAGAGUAGCAUUUAAUUAUAUACUAUUUUUGACACCAUGU

4.Target gene

Target gene	Expectation	UPE	miRNA_aligned start-end	Target_aligned start-end	Aligned Fragment: miRNA-Target
Sobic.003G177700	0.5	10.363	21-1	1387-1407	AUCGAAAAGAUCUAUGUAUCA \|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\| UAGCUUUUCUAGAUGCAUAGU
Sobic.007G119800	1.0	11.704	21-1	3376-3396	AUCGAAAAGAUCUAUGUAUCA \|\|\|\|\|\|\|\|=\|\|\|\|\|\|=\|\|\|\|\| UAGCUUUUUUAGAUAUAUAGU
Sobic.007G106800	1.5	18.958	21-1	1797-1817	AUCGAAAAGAUCUAUGUAUCA \|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|* UAGCUUUUCUAGGUACAUAGG
Sobic.004G357400	1.5	15.872	21-1	1848-1868	AUCGAAAAGAUCUAUGUAUCA \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|* UGGCUUUUCUAGAUACAUAGC
Sobic.006G021700	1.5	17.823	21-1	3716-3736	AUCGAAAAGAUCUAUGUAUCA \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|* UGGCUUUUCUAGAUACAUAGC
Sobic.007G123000	1.5	12.063	21-1	1464-1484	AUCGAAAAGAUCUAUGUAUCA \|=\|=\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\| UGGUUUUUCUAGAUAUAUAGU
Sobic.001G124100	1.5	9.725	21-1	3329-3349	AUCGAAAAGAUCUAUGUAUCA \|=\|=\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\| UGGUUUUUCUAGAUAUAUAGU
Sobic.010G095200	2.0	23.01	21-1	1187-1207	AUCGAAAAGAUCUAUGUAUCA \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|* UGGCUUUUCUAGAUACGUAGA
Sobic.010G095200	2.0	23.01	21-1	1287-1307	AUCGAAAAGAUCUAUGUAUCA \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|* UGGCUUUUCUAGAUACGUAGA
Sobic.010G095200	2.0	23.01	21-1	1300-1320	AUCGAAAAGAUCUAUGUAUCA \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|* UGGCUUUUCUAGAUACGUAGA
Sobic.010G095200	2.0	23.01	21-1	1408-1428	AUCGAAAAGAUCUAUGUAUCA \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|* UGGCUUUUCUAGAUACGUAGA
Sobic.001G193100	2.0	12.734	21-1	2226-2246	AUCGAAAAGAUCUAUGUAUCA \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|*\|\|\| UAGCUUUUCUAGAUAUAGAGU
Sobic.007G046600	2.0	12.649	21-1	25-45	AUCGAAAAGAUCUAUGUAUCA \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| UAGCAUUUCUAGAUACAUAGC
Sobic.002G191800	3.0	12.574	21-1	2334-2354	AUCGAAAAGAUCUAUGUAUCA \|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|=* UAGCUUUUCUAGGUACAUAUC
Sobic.001G341500	2.5	9.171	21-1	1218-1238	AUCGAAAAGAUCUAUGUAUCA \|=\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|*\|\| UGGCUUUUCUAGAUAUAUUGU
Sobic.001G214400	2.5	15.999	21-1	150-170	AUCGAAAAGAUCUAUGUAUCA \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| UGGGUUUUCUAGAUACAUAGC
Sobic.002G338200	2.5	14.529	21-1	1509-1529	AUCGAAAAGAUCUAUGUAUCA \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| UGACUUUUCUAGAUACAUAGA
Sobic.002G275200	3.0	12.257	21-1	2026-2046	AUCGAAAAGAUCUAUGUAUCA \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| UGGCUUUUCUAGAUACAUUGA
Sobic.005G065600	2.5	22.445	21-1	2092-2112	AUCGAAAAGAUCUAUGUAUCA \|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| UGGAUUUUCUAGAUACAUAGC
Sobic.002G268700	2.5	17.937	21-1	2058-2078	AUCGAAAAGAUCUAUGUAUCA \|=\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|* UGGCUUUUCUAUAUACAUAGC
Sobic.001G279100	2.5	10.523	21-1	1615-1635	AUCGAAAAGAUCUAUGUAUCA \|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\| UAUCUUUUCUAGAUACAUUGU
Sobic.001G279100	2.5	10.523	21-1	1618-1638	AUCGAAAAGAUCUAUGUAUCA \|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\| UAUCUUUUCUAGAUACAUUGU
Sobic.001G279100	2.5	10.523	21-1	1618-1638	AUCGAAAAGAUCUAUGUAUCA \|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\| UAUCUUUUCUAGAUACAUUGU
Sobic.001G279100	2.5	10.523	21-1	1621-1641	AUCGAAAAGAUCUAUGUAUCA \|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\| UAUCUUUUCUAGAUACAUUGU
Sobic.002G005400	3.0	15.861	21-1	273-293	AUCGAAAAGAUCUAUGUAUCA \|=*=\|\|\|\|\|\|\|\|\|\|\|==\|\|\|\| UGAUUUUUCUAGAUAUGUAGU
Sobic.006G135300	3.0	14.627	20-1	2150-2169	UCGAAAAGAUCUAUGUAUCA ==\|\|\|\|\|\|\|\|\|\|\|=\|\|\|=\|\| CUCUUUUCUAGAUGCAUGGU
Sobic.009G106500	3.0	20.872	21-1	1827-1847	AUCGAAAAGAUCUAUGUAUCA \|\|\|=\|\|\|=\|\|\|\|\|\|\|\|\|\|\| UAGUUUUGUUACAUACAUAGU
Sobic.001G320200	2.5	15.99	20-1	2826-2845	UCGAAAAGAUCUAUGUAUCA \|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\| AGGUUUUCUGCAUACAUAGU
Sobic.005G106700	3.0	16.289	21-1	4691-4711	AUCGAAAAGAUCUAUGUAUCA \|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| UACAUUGUCUAGAUACAUAGU
Sobic.005G106700	3.0	16.289	21-1	4714-4734	AUCGAAAAGAUCUAUGUAUCA \|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| UACAUUGUCUAGAUACAUAGU
Sobic.005G106700	3.0	16.289	21-1	4748-4768	AUCGAAAAGAUCUAUGUAUCA \|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| UACAUUGUCUAGAUACAUAGU

5.Secondary structure

6.GSE32458

null

7.GSE49879

null

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