Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr0720288682028888-
precursorchr0720288632028968-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
CAGAGCGACUUACAAUUUGGA
>precursor_sequence
UCCCAACAUUCCAAAUUGUAAGUCGUUCUGGCUUUUCUAAGUAGAUUGCUGUGGCUAUGCACCUAUGUAUGUAGAAGAGCCAGAGCGACUUACAAU
UUGGAACAAU

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.009G2030000.514.49321-1147-167

AGGUUUAACAUUCAGCGAGAC
||||||||||||||||=||||
UCCAAAUUGUAAGUCGUUCUG

Sobic.007G0466001.510.31321-16-26

AGGUUUAACAUUCAGCGAGAC
||||||||||||||||=|||*
UCCAAAUUGUAAGUCGUUCUA

Sobic.001G2284002.010.19221-11356-1376

AGGUUUAACAUUCAGCGAGAC
||=|||||||||||=|=|=||
UCUAAAUUGUAAGUUGUUUUG

Sobic.K0028002.012.67521-11238-1258

AGGUUUAACAUUCAGCGAGAC
||||||||||||||*|=||||
UCCAAAUUGUAAGUAGUUCUG

Sobic.003G1083002.512.98921-12714-2734

AGGUUUAACAUUCAGCGAGAC
||||||||||||||=|=|=|=
UCCAAAUUGUAAGUUGUUUUU

Sobic.001G3943002.012.45121-1731-751

AGGUUUAACAUUCAGCGAGAC
||=|||||*|||||||||=||
UCUAAAUUAUAAGUCGCUUUG

Sobic.002G2945002.013.29221-1772-792

AGGUUUAACAUUCAGCGAGAC
||||||||*|||||||=|=||
UCCAAAUUCUAAGUCGUUUUG

Sobic.K0405002.510.55421-11208-1228

AGGUUUAACAUUCAGCGAGAC
|||||||||||||||*=|=||
UCCAAAUUGUAAGUCAUUUUG

Sobic.006G1868002.011.94521-11766-1786

AGGUUUAACAUUCAGCGAGAC
|||||||||||||*=|=||||
UCCAAAUUGUAAGAUGUUCUG

Sobic.001G4219002.022.83821-12890-2910

AGGUUUAACAUUCAGCGAGAC
|=||||||*|||||||||=||
UUCAAAUUAUAAGUCGCUUUG

Sobic.001G4219002.022.83821-12971-2991

AGGUUUAACAUUCAGCGAGAC
|=||||||*|||||||||=||
UUCAAAUUAUAAGUCGCUUUG

Sobic.006G1788002.05.40121-13357-3377

AGGUUUAACAUUCAGCGAGAC
|=||||||*|||||||||=||
UUCAAAUUAUAAGUCGCUUUG

Sobic.001G4219002.022.83821-13325-3345

AGGUUUAACAUUCAGCGAGAC
|=||||||*|||||||||=||
UUCAAAUUAUAAGUCGCUUUG

Sobic.001G1172002.018.53121-14725-4745

AGGUUUAACAUUCAGCGAGAC
||=||||||*||||=||||||
UCUAAAUUGCAAGUUGCUCUG

Sobic.003G0990002.013.64220-11110-1129

GGUUUAACAUUCAGCGAGAC
|||||||||||||||=|=|*
CCAAAUUGUAAGUCGUUUUA

Sobic.004G1067001.512.08920-11993-2012

GGUUUAACAUUCAGCGAGAC
|||||||*|||||||||=||
CCAAAUUAUAAGUCGCUUUG

Sobic.010G0416002.511.81321-1993-1013

AGGUUUAACAUUCAGCGAGAC
||=|||||*|||||=|||=||
UCUAAAUUCUAAGUUGCUUUG

Sobic.006G0098002.57.56121-11044-1064

AGGUUUAACAUUCAGCGAGAC
||=|||||*|||||=|||=||
UCUAAAUUAUAAGUUGCUUUG

Sobic.002G3720002.56.7521-11385-1405

AGGUUUAACAUUCAGCGAGAC
|=||||||||||*|=|=||||
UUCAAAUUGUAAAUUGUUCUG

Sobic.002G2797002.59.84621-11827-1847

AGGUUUAACAUUCAGCGAGAC
|==|||||*|||||||||=||
UUUAAAUUAUAAGUCGCUUUG

Sobic.002G2836003.011.24921-12325-2345

AGGUUUAACAUUCAGCGAGAC
||=||||||||||||*=|=||
UCUAAAUUGUAAGUCAUUUUG

Sobic.001G4454002.519.49121-12407-2427

AGGUUUAACAUUCAGCGAGAC
|=||||||*|||||=|=||||
UUCAAAUUAUAAGUUGUUCUG

Sobic.003G2193002.514.05821-12007-2027

AGGUUUAACAUUCAGCGAGAC
|||||||||||==|=|=||||
UCCAAAUUGUAGUUUGUUCUG

Sobic.001G5182003.08.90221-1848-868

AGGUUUAACAUUCAGCGAGAC
||||||||*|||||=|=|||*
UCCAAAUUAUAAGUUGUUCUA

Sobic.001G2481003.017.34521-11986-2006

AGGUUUAACAUUCAGCGAGAC
||=||||*||||||||||=|=
UCUAAAUGGUAAGUCGCUUUU

Sobic.001G5323003.020.28621-13467-3487

AGGUUUAACAUUCAGCGAGAC
|||||||*||||||=|=|||*
UCCAAAUCGUAAGUUGUUCUA

Sobic.002G1918003.010.37521-12315-2335

AGGUUUAACAUUCAGCGAGAC
||=|||||||||=|||=|||*
UCUAAAUUGUAAUUCGUUCUA

Sobic.003G2597002.516.221-1867-887

AGGUUUAACAUUCAGCGAGAC
||||||*|*|||||||=||||
UCCAAACUAUAAGUCGUUCUG

Sobic.009G2421002.59.97421-13649-3669

AGGUUUAACAUUCAGCGAGAC
|||||||**|||||||||=||
UCCAAAUCAUAAGUCGCUUUG

Sobic.009G2421002.59.97421-13814-3834

AGGUUUAACAUUCAGCGAGAC
|||||||**|||||||||=||
UCCAAAUCAUAAGUCGCUUUG

Sobic.001G2969003.012.07820-11707-1726

GGUUUAACAUUCAGCGAGAC
||||||||||||||*=|||*
CCAAAUUGUAAGUCAUUCUA

Sobic.002G3719003.011.29220-11235-1254

GGUUUAACAUUCAGCGAGAC
||||||||||||||*=|||*
CCAAAUUGUAAGUCAUUCUA

Sobic.003G0859003.09.81220-13316-3335

GGUUUAACAUUCAGCGAGAC
||||||||||||||*=|||*
CCAAAUUGUAAGUCAUUCUA

Sobic.009G2361003.011.33520-13188-3207

GGUUUAACAUUCAGCGAGAC
||||||||||||||*=|||*
CCAAAUUGUAAGUCAUUCUA

Sobic.003G2411003.011.24421-12075-2095

AGGUUUAACAUUCAGCGAGAC
||||||||*|||=|=|=||||
UCCAAAUUAUAAUUUGUUCUG

Sobic.001G2224003.017.19521-13128-3148

AGGUUUAACAUUCAGCGAGAC
|=|=||||*|||||||=||||
UUCCAAUUAUAAGUCGUUCUG

Sobic.001G2224003.017.19521-13291-3311

AGGUUUAACAUUCAGCGAGAC
|=|=||||*|||||||=||||
UUCCAAUUAUAAGUCGUUCUG

Sobic.009G1316003.023.61321-12887-2907

AGGUUUAACAUUCAGCGAGAC
||||||||*||||*||=|=||
UCCAAAUUAUAAGCCGUUUUG

Sobic.001G2224003.017.19521-13128-3148

AGGUUUAACAUUCAGCGAGAC
|=|=||||*|||||||=||||
UUCCAAUUAUAAGUCGUUCUG

Sobic.001G2224003.017.19521-13501-3521

AGGUUUAACAUUCAGCGAGAC
|=|=||||*|||||||=||||
UUCCAAUUAUAAGUCGUUCUG

Sobic.006G0684003.014.87221-15842-5862

AGGUUUAACAUUCAGCGAGAC
||||||||*||||*=|=||||
UCCAAAUUAUAAGGUGUUCUG

Sobic.004G2392003.013.79421-15990-6010

AGGUUUAACAUUCAGCGAGAC
||||||||*||||*=|=||||
UCCAAAUUAUAAGGUGUUCUG

Sobic.001G2559003.018.03420-11560-1579

GGUUUAACAUUCAGCGAGAC
|||||||*||||*||=|=||
CCAAAUUAUAAGACGUUUUG


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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