miRNA detail annotation

Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image

2.Location informaition

Type	Chromosome	Start	End	Strand	SNP(TSS up 2kb)	SNP(gene body)
mature	chr04	44092487	44092506	+
precursor	chr04	44092392	44092507	+	more details in SorGSD	more details in SorGSD

3.miRNA sequence

>mature_sequence

CUGUACCCUCUCUCUUCUUC

>precursor_sequence

GGGAGAAGAGAGAGAGUACAGCCUUACCAUGUACACACACUCCAAUCUCAACAGUCUCUUAUAUAUGCUGCUGUUACCUGUGAGUGUGAUGAAGGC
UGUACCCUCUCUCUUCUUCU

4.Target gene

Target gene	Expectation	UPE	miRNA_aligned start-end	Target_aligned start-end	Aligned Fragment: miRNA-Target
Sobic.004G278700	1.5	24.75	20-1	1833-1852	CUUCUUCUCUCUCCCAUGUC \|\|\|\|\|=\|\|\|\|\|=\|\|\|\|\|\|\|\| GAAGACGAGAGGGGGUACAG
Sobic.002G111700	2.5	23.034	20-1	2829-2848	CUUCUUCUCUCUCCCAUGUC \|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\| AAAGAAGAGAAGGGGUACAG
Sobic.002G111700	2.5	23.034	20-1	2829-2848	CUUCUUCUCUCUCCCAUGUC \|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\| AAAGAAGAGAAGGGGUACAG
Sobic.009G255300	3.0	18.667	20-1	620-639	CUUCUUCUCUCUCCCAUGUC *=\|\|=\|\|=\|\|\|\|\|\|\|\|\|=\|\| AGAGGAGGGAGAGGGUAUAG
Sobic.006G182300	2.5	16.525	20-1	3551-3570	CUUCUUCUCUCUCCCAUGUC \|\|=*=\|\|\|\|\|\|\|\|\|\|\|=\|\|\| GAGAGAGAGAGAGGGUGCAG
Sobic.006G182300	2.5	16.525	20-1	2939-2958	CUUCUUCUCUCUCCCAUGUC \|\|=*=\|\|\|\|\|\|\|\|\|\|\|=\|\|\| GAGAGAGAGAGAGGGUGCAG
Sobic.010G065700	3.0	15.356	20-1	1268-1287	CUUCUUCUCUCUCCCAUGUC \|\|=\|\|\|\|\|==\|=\|\|\|\|\|\|=\| GAGGAAGAUGGGGGGUACGG

5.Secondary structure

6.GSE32458

null

7.GSE49879

AR2400 under different growth stage	log2(expression profile data)
leaf_38_AR2400	3.317
seedling_root_AR2400_ave	3.494
seedling_shoot_AR2400_ave	3.797
shoot_tip_38_AR2400	4.759
internode_61DAP_AR2400_T	3.427
internode_70DAP_AR2400_M	3.434
internode_61DAP_AR2400_B	3.408

Atlas under different growth stage	log2(expression profile data)
leaf_38_Atlas	3.348
seedling_root_Atlas	3.39
seedling_shoot_Atlas_ave	3.524
shoot_tip_38_Atlas	4.529
internode_61DAP_Atlas_T	4.269
internode_70DAP_Atlas_M	3.799
internode_61DAP_Atlas_B	3.607
pith_70DAP_Atlas_T	3.629
pith_70DAP_Atlas_M	3.715
pith_70DAP_Atlas_B	4.32
pith_60DAP_Atlas_ave	3.610
rind_70DAP_Atlas_T	3.797
rind_70DAP_Atlas_M	3.745
rind_70DAP_Atlas_B	3.305
rind_60DAP_Atlas_ave	4.060

Fremont under different growth stage	log2(expression profile data)
leaf_38_Fremont	3.062
seedling_root_Fremont_ave	3.153
seedling_shoot_Fremont_ave	3.586
shoot_tip_38_Fremont	3.914
internode_61DAP_Fremont_T	3.233
internode_70DAP_Fremont_M	3.292
internode_61DAP_Fremont_B	3.242

PI152611 under different growth stage	log2(expression profile data)
leaf_38_PI152611	3.834
seedling_root_PI152611	4.109
seedling_shoot_PI152611_ave	3.858
shoot_tip_38_PI152611	4.021
internode_61DAP_PI152611_T	4.075
internode_70DAP_PI152611_M	3.89
internode_61DAP_PI152611_B	3.479

PI455230 under different growth stage	log2(expression profile data)
leaf_38DAP_ PI455230	4.022
seedling_root_PI455230	4.282
seedling_shoot_PI455230_ave	3.935
shoot_tip_38DAP_ PI455230	3.334
internode_61DAP_PI455230	3.433
internode_70DAP_PI455230_M	3.893
internode_61DAP_PI455230_B	3.773
pith_70DAP_PI455230_M	3.74
pith_70DAP_PI455230_B	3.784
pith_60DAP_PI455230_ave	4.049
rind_70DAP_PI455230_T	5.211
rind_70DAP_PI455230_M	3.998
rind_70DAP_PI455230_B	3.851
rind_60DAP_PI455230_ave	3.653

R159 under different growth stage	log2(expression profile data)
leaf_38DAP_ R159	4.123
seedling_root_R159	3.812
seedling_shoot_R159_ave	3.616
shoot_tip_38DAP_ R159	4.867
internode_61DAP_R159_T	3.765
internode_61DAP_R159_B	3.804
pith_70DAP_R159_T	4.09
pith_70DAP_R159_B	4.18
pith_60DAP_R159	4.545
rind_70DAP_R159_T	4.109
rind_70DAP_R159_B	4.143
rind_60DAP_R159	3.57

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