Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr064990101849901038-
precursorchr064990101649901191-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
AAAGUUAGAGAAGUUUGACUU
>precursor_sequence
AAGUCAAACUUCUUUAACUUUGUCCAGGUUUAUAGAAAAACACUCAAACAUCUAGAAUAUCAGAUGAGUUUCAUUAGAUUCUUUAUGCAAUAUAUU
UUGAUAGAGAAUUUAUUUGAACUUGUAAAUGUCAGUAUAUUUUCUAAAAGCACGGUCAAAGUUAGAGAAGUUUGACUUAG

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.003G0453001.010.521-12188-2208

UUCAGUUUGAAGAGAUUGAAA
|||||||||||||=||=||||
AAGUCAAACUUCUUUAGCUUU

Sobic.003G0453001.010.521-12258-2278

UUCAGUUUGAAGAGAUUGAAA
|||||||||||||=||=||||
AAGUCAAACUUCUUUAGCUUU

Sobic.003G0453001.010.521-12264-2284

UUCAGUUUGAAGAGAUUGAAA
|||||||||||||=||=||||
AAGUCAAACUUCUUUAGCUUU

Sobic.008G0883001.012.02921-12309-2329

UUCAGUUUGAAGAGAUUGAAA
||||||||=||||||||=|||
AAGUCAAAUUUCUCUAAUUUU

Sobic.008G0883001.012.02921-12409-2429

UUCAGUUUGAAGAGAUUGAAA
||||||||=||||||||=|||
AAGUCAAAUUUCUCUAAUUUU

Sobic.003G2056000.59.95520-12318-2337

UCAGUUUGAAGAGAUUGAAA
||||||||||=|||||||||
AGUCAAACUUUUCUAACUUU

Sobic.003G2056000.510.19420-12417-2436

UCAGUUUGAAGAGAUUGAAA
||||||||||=|||||||||
AGUCAAACUUUUCUAACUUU

Sobic.008G1527001.015.7220-11841-1860

UCAGUUUGAAGAGAUUGAAA
=|||||||||=|||||||||
GGUCAAACUUUUCUAACUUU

Sobic.008G1527001.015.7220-11850-1869

UCAGUUUGAAGAGAUUGAAA
=|||||||||=|||||||||
GGUCAAACUUUUCUAACUUU

Sobic.003G2605001.59.13321-11070-1090

UUCAGUUUGAAGAGAUUGAAA
||||||||=*|||||||||||
AAGUCAAAUCUCUCUAACUUU

Sobic.003G0035001.512.21621-12275-2295

UUCAGUUUGAAGAGAUUGAAA
|||*|||||||=|||||||||
AAGCCAAACUUUUCUAACUUU

Sobic.001G2564001.511.57121-13020-3040

UUCAGUUUGAAGAGAUUGAAA
||||=||||||*|||||||||
AAGUUAAACUUAUCUAACUUU

Sobic.003G0859002.018.34521-13347-3367

UUCAGUUUGAAGAGAUUGAAA
|||||||||||=|||||*|||
AAGUCAAACUUUUCUAAGUUU

Sobic.001G2564001.511.57121-13113-3133

UUCAGUUUGAAGAGAUUGAAA
||||=||||||*|||||||||
AAGUUAAACUUAUCUAACUUU

Sobic.008G0287002.014.84121-16360-6380

UUCAGUUUGAAGAGAUUGAAA
|=||||||=|||||||==|||
AGGUCAAAUUUCUCUAGUUUU

Sobic.009G0645002.59.63921-11166-1186

UUCAGUUUGAAGAGAUUGAAA
|||||||||||=|=*||||||
AAGUCAAACUUUUUAAACUUU

Sobic.006G0914002.512.42321-11248-1268

UUCAGUUUGAAGAGAUUGAAA
|||||||||||=||*||=|||
AAGUCAAACUUUUCGAAUUUU

Sobic.009G1636002.019.01521-11536-1556

UUCAGUUUGAAGAGAUUGAAA
=||||||||||=|||||*|||
GAGUCAAACUUUUCUAAGUUU

Sobic.002G3719002.019.89321-11266-1286

UUCAGUUUGAAGAGAUUGAAA
=||||||||||=|||||*|||
GAGUCAAACUUUUCUAAGUUU

Sobic.004G2190002.019.98621-12378-2398

UUCAGUUUGAAGAGAUUGAAA
=||||||||||=|||||*|||
GAGUCAAACUUUUCUAAGUUU

Sobic.005G0759002.015.62521-1992-1012

UUCAGUUUGAAGAGAUUGAAA
=||||||||||=|||||*|||
GAGUCAAACUUUUCUAAGUUU

Sobic.001G2875001.511.61720-18656-8675

UCAGUUUGAAGAGAUUGAAA
|||||||=||=|=|||||||
AGUCAAAUUUUUUUAACUUU

Sobic.008G1391002.019.08621-13066-3086

UUCAGUUUGAAGAGAUUGAAA
=||||||||||=|||||*|||
GAGUCAAACUUUUCUAAGUUU

Sobic.009G2361002.017.63821-13219-3239

UUCAGUUUGAAGAGAUUGAAA
=||||||||||=|||||*|||
GAGUCAAACUUUUCUAAGUUU

Sobic.010G2514002.017.40121-11253-1273

UUCAGUUUGAAGAGAUUGAAA
=||||||||||=|||||*|||
GAGUCAAACUUUUCUAAGUUU

Sobic.009G1098002.511.32521-1554-574

UUCAGUUUGAAGAGAUUGAAA
=|||||||=||=|||||*|||
GAGUCAAAUUUUUCUAAGUUU

Sobic.001G2182002.58.55421-11044-1064

UUCAGUUUGAAGAGAUUGAAA
|||||||||||=*=||=||||
AAGUCAAACUUUAUUAGCUUU

Sobic.003G2472002.515.42221-11122-1142

UUCAGUUUGAAGAGAUUGAAA
=|||=||||||=|||||*|||
GAGUUAAACUUUUCUAAGUUU

Sobic.009G1308003.010.96521-11183-1203

UUCAGUUUGAAGAGAUUGAAA
|||||||||||=||||==*||
AAGUCAAACUUUUCUAGUCUU

Sobic.001G0340002.516.73121-11637-1657

UUCAGUUUGAAGAGAUUGAAA
=|||||||=||=|||||*|||
GAGUCAAAUUUUUCUAAGUUU

Sobic.001G1315002.513.92721-1723-743

UUCAGUUUGAAGAGAUUGAAA
|||*||||=||||=|||=|||
AAGCCAAAUUUCUUUAAUUUU

Sobic.001G1775003.014.85121-12108-2128

UUCAGUUUGAAGAGAUUGAAA
|||||||||||=|=*||=|||
AAGUCAAACUUUUUAAAUUUU

Sobic.003G0990002.57.65421-11140-1160

UUCAGUUUGAAGAGAUUGAAA
||||||||||||*|*||||||
AAGUCAAACUUCGCCAACUUU

Sobic.008G0659002.518.24920-11171-1190

UCAGUUUGAAGAGAUUGAAA
||||||||||=|=|||*|||
AGUCAAACUUUUUUAAGUUU

Sobic.003G0416002.010.40320-11143-1162

UCAGUUUGAAGAGAUUGAAA
||||||*=||=|||||||||
AGUCAAUUUUUUCUAACUUU

Sobic.004G0029002.09.22320-1886-905

UCAGUUUGAAGAGAUUGAAA
|||=||||||*|=|||||||
AGUUAAACUUGUUUAACUUU

Sobic.001G3112003.013.05121-12125-2145

UUCAGUUUGAAGAGAUUGAAA
|==|||||=|||||||||||*
AGUUCAAAUUUCUCUAACUUA

Sobic.003G3557002.511.86321-186-106

UUCAGUUUGAAGAGAUUGAAA
=|||||||=*|=|=|||||||
GAGUCAAAUAUUUUUAACUUU

Sobic.002G1411003.010.05421-11346-1366

UUCAGUUUGAAGAGAUUGAAA
=||||||||||=|=||*=|||
GAGUCAAACUUUUUUAUUUUU

Sobic.006G2463003.013.62921-11645-1665

UUCAGUUUGAAGAGAUUGAAA
|||||||||||=|**||||||
AAGUCAAACUUUUAAAACUUU

Sobic.004G3151002.512.60321-11406-1426

UUCAGUUUGAAGAGAUUGAAA
|||*|||||||*|||||=|||
AAGCCAAACUUGUCUAAUUUU

Sobic.001G2802003.022.10221-11688-1708

UUCAGUUUGAAGAGAUUGAAA
|||||||||||||*|||=|*|
AAGUCAAACUUCUGUAAUUCU

Sobic.004G3151002.512.60321-11540-1560

UUCAGUUUGAAGAGAUUGAAA
|||*|||||||*|||||=|||
AAGCCAAACUUGUCUAAUUUU

Sobic.001G2802003.022.10221-11815-1835

UUCAGUUUGAAGAGAUUGAAA
|||||||||||||*|||=|*|
AAGUCAAACUUCUGUAAUUCU

Sobic.006G2463003.013.62921-11955-1975

UUCAGUUUGAAGAGAUUGAAA
|||||||||||=|**||||||
AAGUCAAACUUUUAAAACUUU

Sobic.007G0259002.53.31121-12059-2079

UUCAGUUUGAAGAGAUUGAAA
||*|||||=||||*|||||||
AAAUCAAAUUUCUAUAACUUU

Sobic.007G0926002.514.61621-12347-2367

UUCAGUUUGAAGAGAUUGAAA
|||||||=|*|*|||||||||
AAGUCAAGCAUAUCUAACUUU

Sobic.009G0793002.010.15221-13488-3507

UUCAGUUUGAAGAGAUUGAAA
|||||||||||||*|||||||
AAGUCAAACUUCU-UAACUUU

Sobic.009G1984002.517.06621-13796-3816

UUCAGUUUGAAGAGAUUGAAA
=|||*=|||||=||||=||||
GAGUAGAACUUUUCUAGCUUU

Sobic.002G1564003.010.82121-14293-4313

UUCAGUUUGAAGAGAUUGAAA
||||*||||||=||||=||||
AAGUGAAACUUUUCUACCUUU

Sobic.010G0561003.010.80721-15299-5319

UUCAGUUUGAAGAGAUUGAAA
|||||||||||*|=*||||||
AAGUCAAACUUGUUCAACUUU

Sobic.003G0097003.010.70920-11851-1870

UCAGUUUGAAGAGAUUGAAA
|||=||||||=|=|||*|||
AGUUAAACUUUUUUAAAUUU

Sobic.002G2075002.57.09820-125-44

UCAGUUUGAAGAGAUUGAAA
=||||||||*=|=|||||||
GGUCAAACUCUUUUAACUUU

Sobic.009G1174003.021.10720-12439-2458

UCAGUUUGAAGAGAUUGAAA
=||=||||||=|||||*|||
GGUUAAACUUUUCUAAGUUU

Sobic.002G3111003.017.10720-13061-3080

UCAGUUUGAAGAGAUUGAAA
|||=||||||=|=*||||||
AGUUAAACUUUUUAAACUUU

Sobic.003G0692003.011.81421-11969-1989

UUCAGUUUGAAGAGAUUGAAA
=|||||||||*=|=||||||*
GAGUCAAACUAUUUUAACUUG

Sobic.002G3111003.017.10720-13084-3103

UCAGUUUGAAGAGAUUGAAA
|||=||||||=|=*||||||
AGUUAAACUUUUUAAACUUU

Sobic.003G0824003.021.37421-1712-732

UUCAGUUUGAAGAGAUUGAAA
||||||=||*|||*||=||||
AAGUCAGACAUCUAUAGCUUU

Sobic.001G3217003.015.74420-1631-650

UCAGUUUGAAGAGAUUGAAA
|||||||=||=|=|||*|||
AGUCAAAUUUUUUUAAGUUU

Sobic.009G0029003.012.93921-11729-1749

UUCAGUUUGAAGAGAUUGAAA
|||||||||*|=*=|||||||
AAGUCAAACAUUCUUAACUUU

Sobic.009G0029003.012.93921-11822-1842

UUCAGUUUGAAGAGAUUGAAA
|||||||||*|=*=|||||||
AAGUCAAACAUUCUUAACUUU

Sobic.003G3183003.012.46921-12867-2887

UUCAGUUUGAAGAGAUUGAAA
||||||||**|=|=|||||||
AAGUCAAAGGUUUUUAACUUU

Sobic.003G1017003.016.52821-12129-2149

UUCAGUUUGAAGAGAUUGAAA
=|||||=|*||||=|=|=|||
GAGUCAGAAUUCUUUGAUUUU

Sobic.004G0528002.514.67520-11591-1610

UCAGUUUGAAGAGAUUGAAA
|||*||||||*|=|||||||
AGUGAAACUUGUUUAACUUU

Sobic.008G1243003.013.47621-1810-830

UUCAGUUUGAAGAGAUUGAAA
=||*||||||*=|||||=|||
GAGACAAACUAUUCUAAUUUU


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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