Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr0498683279868347+
precursorchr0498682869868348+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UGCCAAAGGGGAUUUGCCCGG
>precursor_sequence
AGGGCAACCCUCCAUUGGCAGGUGCGACCUACACCCUACCCUGCCAAAGGGGAUUUGCCCGGC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end		Target_aligned
start-end		Aligned Fragment:
miRNA-Target
Sobic.009G2281001.012.56521-11183-1203

GGCCCGUUUAGGGGAAACCGU
|=|||||||||=|||||||||
CUGGGCAAAUCUCCUUUGGCA

Sobic.009G2281001.014.78421-11265-1285

GGCCCGUUUAGGGGAAACCGU
|=|||||||||=|||||||||
CUGGGCAAAUCUCCUUUGGCA

Sobic.009G2281000.512.86921-11314-1334

GGCCCGUUUAGGGGAAACCGU
=||||||||||=|||||||||
UCGGGCAAAUCUCCUUUGGCA

Sobic.009G2281001.015.67721-11223-1243

GGCCCGUUUAGGGGAAACCGU
==|||||||||=|||||||||
UUGGGCAAAUCUCCUUUGGCA


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24005.642
seedling_root_AR2400_ave5.111
seedling_shoot_AR2400_ave5.019
shoot_tip_38_AR24005.034
internode_61DAP_AR2400_T5.548
internode_70DAP_AR2400_M4.612
internode_61DAP_AR2400_B5.174
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas6.005
seedling_root_Atlas5.242
seedling_shoot_Atlas_ave4.742
shoot_tip_38_Atlas5.467
internode_61DAP_Atlas_T5.199
internode_70DAP_Atlas_M4.339
internode_61DAP_Atlas_B5.432
pith_70DAP_Atlas_T4.145
pith_70DAP_Atlas_M5.258
pith_70DAP_Atlas_B4.968
pith_60DAP_Atlas_ave5.885
rind_70DAP_Atlas_T5.008
rind_70DAP_Atlas_M5.378
rind_70DAP_Atlas_B5.692
rind_60DAP_Atlas_ave6.053
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont5.692
seedling_root_Fremont_ave5.932
seedling_shoot_Fremont_ave5.554
shoot_tip_38_Fremont5.174
internode_61DAP_Fremont_T4.455
internode_70DAP_Fremont_M3.717
internode_61DAP_Fremont_B5.001
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526115.468
seedling_root_PI1526115.311
seedling_shoot_PI152611_ave5.187
shoot_tip_38_PI1526116.11
internode_61DAP_PI152611_T5.328
internode_70DAP_PI152611_M4.645
internode_61DAP_PI152611_B5.524
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552305.68
seedling_root_PI4552305.282
seedling_shoot_PI455230_ave5.031
shoot_tip_38DAP_ PI4552304.429
internode_61DAP_PI4552304.075
internode_70DAP_PI455230_M3.959
internode_61DAP_PI455230_B5.01
pith_70DAP_PI455230_M4.733
pith_70DAP_PI455230_B5.048
pith_60DAP_PI455230_ave5.350
rind_70DAP_PI455230_T4.422
rind_70DAP_PI455230_M4.817
rind_70DAP_PI455230_B6.255
rind_60DAP_PI455230_ave4.963
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1595.705
seedling_root_R1594.394
seedling_shoot_R159_ave5.127
shoot_tip_38DAP_ R1594.979
internode_61DAP_R159_T5.217
internode_61DAP_R159_B5.387
pith_70DAP_R159_T4.481
pith_70DAP_R159_B5.03
pith_60DAP_R1594.615
rind_70DAP_R159_T5.116
rind_70DAP_R159_B4.889
rind_60DAP_R1595.232

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