Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr065504300455043024+
precursorchr065504292355043043+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UGCCAAAGGAGAGUUGCCCUG
>precursor_sequence
AUGCCUAAGCUGUCCAGUUUCAGGGCUUCUCUUUCUUGGCAGGGAGCAUGAGAAGCCAUAGCUCUGCUCUGUUCUGCCCUCUGCCAAAGGAGAGUU
GCCCUGUAACAGGACUCAGCUUAUG

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.009G2281001.022.81921-11010-1030

GUCCCGUUGAGAGGAAACCGU
=|||||||*||||||||||||
UAGGGCAAAUCUCCUUUGGCA

Sobic.003G2095002.023.38320-12166-2185

UCCCGUUGAGAGGAAACCGU
=|||=|==||||||||||||
GGGGUAGUUCUCCUUUGGCA

Sobic.003G4043003.021.42621-15-25

GUCCCGUUGAGAGGAAACCGU
||||=|=|||||=|||||||=
CAGGUCCACUCUUCUUUGGCG

Sobic.005G1272003.023.70221-11769-1789

GUCCCGUUGAGAGGAAACCGU
|*||||||||=|=*|||||||
CUGGGCAACUUUUGUUUGGCA

Sobic.005G1240003.022.44220-1102-121

UCCCGUUGAGAGGAAACCGU
=||||=||*||==|||||||
GGGGCGACGCUUUUUUGGCA

Sobic.005G0717003.018.43620-11818-1837

UCCCGUUGAGAGGAAACCGU
|||||||**|||=|||||=|
AGGGCAAGACUCUUUUGGUA


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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