Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr095568831355688333+
precursorchr095568822855688352+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UGCCAAAGGAAAUUUGCCCCG
>precursor_sequence
CCAGAUGUGCACUUGCAUUGCUGGGCAACUUCUCCUUUGGCAGAUGCGCAAUGUGCUCCGACCCUGGGGCUUCUUCCGCGCCUACUGCCAAAGGAA
AUUUGCCCCGGAAUUCACCUGCACAGCCA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end		Target_aligned
start-end		Aligned Fragment:
miRNA-Target
Sobic.009G2281002.012.56521-11183-1203

GCCCCGUUUAAAGGAAACCGU
|=||||||||*||||||||||
CUGGGCAAAUCUCCUUUGGCA

Sobic.009G2281002.014.78421-11265-1285

GCCCCGUUUAAAGGAAACCGU
|=||||||||*||||||||||
CUGGGCAAAUCUCCUUUGGCA

Sobic.003G2095003.023.38320-12166-2185

CCCCGUUUAAAGGAAACCGU
||||=|=*|*||||||||||
GGGGUAGUUCUCCUUUGGCA


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24006.216
seedling_root_AR2400_ave6.243
seedling_shoot_AR2400_ave6.576
shoot_tip_38_AR24006.673
internode_61DAP_AR2400_T6.743
internode_70DAP_AR2400_M5.968
internode_61DAP_AR2400_B6.515
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas6.65
seedling_root_Atlas7.277
seedling_shoot_Atlas_ave6.722
shoot_tip_38_Atlas7.624
internode_61DAP_Atlas_T6.687
internode_70DAP_Atlas_M6.806
internode_61DAP_Atlas_B6.864
pith_70DAP_Atlas_T6.397
pith_70DAP_Atlas_M7.116
pith_70DAP_Atlas_B6.518
pith_60DAP_Atlas_ave6.602
rind_70DAP_Atlas_T6.366
rind_70DAP_Atlas_M7.096
rind_70DAP_Atlas_B6.6
rind_60DAP_Atlas_ave6.765
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont6.318
seedling_root_Fremont_ave6.234
seedling_shoot_Fremont_ave6.985
shoot_tip_38_Fremont6.692
internode_61DAP_Fremont_T6.242
internode_70DAP_Fremont_M6.371
internode_61DAP_Fremont_B6.695
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526116.283
seedling_root_PI1526117
seedling_shoot_PI152611_ave6.552
shoot_tip_38_PI1526118.088
internode_61DAP_PI152611_T6.373
internode_70DAP_PI152611_M6.078
internode_61DAP_PI152611_B6.526
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552307.885
seedling_root_PI4552306.647
seedling_shoot_PI455230_ave7.086
shoot_tip_38DAP_ PI4552305.946
internode_61DAP_PI4552306.527
internode_70DAP_PI455230_M6.316
internode_61DAP_PI455230_B6.984
pith_70DAP_PI455230_M6.799
pith_70DAP_PI455230_B6.599
pith_60DAP_PI455230_ave6.749
rind_70DAP_PI455230_T6.812
rind_70DAP_PI455230_M7.198
rind_70DAP_PI455230_B6.833
rind_60DAP_PI455230_ave6.520
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1596.32
seedling_root_R1596.88
seedling_shoot_R159_ave6.671
shoot_tip_38DAP_ R1597.892
internode_61DAP_R159_T6.415
internode_61DAP_R159_B6.612
pith_70DAP_R159_T6.135
pith_70DAP_R159_B6.687
pith_60DAP_R1596.872
rind_70DAP_R159_T6.653
rind_70DAP_R159_B6.912
rind_60DAP_R1596.984

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