Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr095568387855683898+
precursorchr095568379255683917+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UGCCAAAGGAGAUUUGCCCAG
>precursor_sequence
ACAUGCGGGGCCAUGCAUUACCGGGUGGGUCUCCUCUGGCAGUAACUUGGCUGGUCGCCUGGUCCAUGAUACCUGCGUGCAGACACUGCCAAAGGA
GAUUUGCCCAGCAAUGCAGUUUUGAGUCCC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end		Target_aligned
start-end		Aligned Fragment:
miRNA-Target
Sobic.009G2281000.012.56521-11183-1203

GACCCGUUUAGAGGAAACCGU
|||||||||||||||||||||
CUGGGCAAAUCUCCUUUGGCA

Sobic.009G2281000.014.78421-11265-1285

GACCCGUUUAGAGGAAACCGU
|||||||||||||||||||||
CUGGGCAAAUCUCCUUUGGCA

Sobic.009G2281000.015.67721-11223-1243

GACCCGUUUAGAGGAAACCGU
=||||||||||||||||||||
UUGGGCAAAUCUCCUUUGGCA

Sobic.005G1272003.023.70221-11769-1789

GACCCGUUUAGAGGAAACCGU
||||||||=|=|=*|||||||
CUGGGCAACUUUUGUUUGGCA

Sobic.003G2095003.023.38320-12166-2185

ACCCGUUUAGAGGAAACCGU
*|||=|=*||||||||||||
GGGGUAGUUCUCCUUUGGCA


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24009.24
seedling_root_AR2400_ave8.968
seedling_shoot_AR2400_ave8.582
shoot_tip_38_AR24007.562
internode_61DAP_AR2400_T7.321
internode_70DAP_AR2400_M7.325
internode_61DAP_AR2400_B8.491
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas9.383
seedling_root_Atlas8.537
seedling_shoot_Atlas_ave8.571
shoot_tip_38_Atlas7.896
internode_61DAP_Atlas_T8.326
internode_70DAP_Atlas_M7.981
internode_61DAP_Atlas_B7.636
pith_70DAP_Atlas_T8.442
pith_70DAP_Atlas_M8.374
pith_70DAP_Atlas_B7.715
pith_60DAP_Atlas_ave8.826
rind_70DAP_Atlas_T7.727
rind_70DAP_Atlas_M8.868
rind_70DAP_Atlas_B8.149
rind_60DAP_Atlas_ave9.675
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont9.611
seedling_root_Fremont_ave9.245
seedling_shoot_Fremont_ave8.943
shoot_tip_38_Fremont7.529
internode_61DAP_Fremont_T7.994
internode_70DAP_Fremont_M7.972
internode_61DAP_Fremont_B8.423
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526119.138
seedling_root_PI1526118.329
seedling_shoot_PI152611_ave8.593
shoot_tip_38_PI1526119.113
internode_61DAP_PI152611_T9.481
internode_70DAP_PI152611_M8.077
internode_61DAP_PI152611_B8.807
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552308.304
seedling_root_PI4552308.593
seedling_shoot_PI455230_ave8.314
shoot_tip_38DAP_ PI4552307.298
internode_61DAP_PI4552307.021
internode_70DAP_PI455230_M7.918
internode_61DAP_PI455230_B8.903
pith_70DAP_PI455230_M8.6
pith_70DAP_PI455230_B8.466
pith_60DAP_PI455230_ave8.493
rind_70DAP_PI455230_T6.066
rind_70DAP_PI455230_M8.542
rind_70DAP_PI455230_B9.242
rind_60DAP_PI455230_ave8.449
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1599.23
seedling_root_R1598.428
seedling_shoot_R159_ave8.218
shoot_tip_38DAP_ R1597.33
internode_61DAP_R159_T7.935
internode_61DAP_R159_B8.829
pith_70DAP_R159_T8.066
pith_70DAP_R159_B8.031
pith_60DAP_R1598.281
rind_70DAP_R159_T6.851
rind_70DAP_R159_B7.778
rind_60DAP_R1598.471

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