Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr095568224455682264-
precursorchr095568222555682354-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UGCCAAAGGAGAAUUGCCCUG
>precursor_sequence
CAUAUGCUGAGCAUGAAUUACAGGGUACAUCUCCUUUGGCACAGAUGCAUGCAGCAGAAUGCAUAUAUGCAUAUGCGAAACUGUCGAGCGUGCCAA
AGGAGAAUUGCCCUGCGAUUCUAGGCUCUGCAAU

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.009G2281001.022.81921-11010-1030

GUCCCGUUAAGAGGAAACCGU
=|||||||*||||||||||||
UAGGGCAAAUCUCCUUUGGCA

Sobic.009G2281001.514.70221-11401-1421

GUCCCGUUAAGAGGAAACCGU
|*|||=|||||||||||||||
CUGGGUAAUUCUCCUUUGGCA

Sobic.003G2095001.523.38320-12166-2185

UCCCGUUAAGAGGAAACCGU
=|||=|=|||||||||||||
GGGGUAGUUCUCCUUUGGCA

Sobic.006G1665003.024.19420-11270-1289

UCCCGUUAAGAGGAAACCGU
|||||==|||||||||*|=|
AGGGCGGUUCUCCUUUCGUA

Sobic.008G0712003.014.68720-11295-1314

UCCCGUUAAGAGGAAACCGU
|*|||||||||*|||||||*
ACGGCAAUUCUGCUUUGGCU

Sobic.005G0717003.018.43620-11818-1837

UCCCGUUAAGAGGAAACCGU
|||||||**|||=|||||=|
AGGGCAAGACUCUUUUGGUA


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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