Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr021519083315190853-
precursorchr021519083215190940-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UGUGUUCUCAGGUCGCCCCCG
>precursor_sequence
GGGGGCGGACUGGGAACACAUGGGAAUGAGAGAUGAGAUUGCUCGGUCGUGCUGGCCCUGGGCUCGUAGUUGAUCUGCUUGUAUGCAUGUGUUCUC
AGGUCGCCCCCGC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.001G3719003.020.11921-1210-230

GCCCCCGCUGGACUCUUGUGU
|||||||*=|||||||*||||
CGGGGGCCGCCUGAGAUCACA

Sobic.009G2516003.018.18420-190-109

CCCCCGCUGGACUCUUGUGU
*|||||||||*||||||||=
AGGGGCGACCCGAGAACACC


5.Secondary structure

6.GSE32458

TissueNormalization read count
leaves0.01
flower0
Young panicle in early grain fill0

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24008.009
seedling_root_AR2400_ave8.187
seedling_shoot_AR2400_ave8.256
shoot_tip_38_AR24009.137
internode_61DAP_AR2400_T8.271
internode_70DAP_AR2400_M7.97
internode_61DAP_AR2400_B8.552
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas8.4
seedling_root_Atlas8.739
seedling_shoot_Atlas_ave8.541
shoot_tip_38_Atlas8.947
internode_61DAP_Atlas_T8.531
internode_70DAP_Atlas_M8.62
internode_61DAP_Atlas_B8.625
pith_70DAP_Atlas_T8.415
pith_70DAP_Atlas_M8.616
pith_70DAP_Atlas_B8.797
pith_60DAP_Atlas_ave8.532
rind_70DAP_Atlas_T8.597
rind_70DAP_Atlas_M8.285
rind_70DAP_Atlas_B8.382
rind_60DAP_Atlas_ave8.393
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont7.966
seedling_root_Fremont_ave8.327
seedling_shoot_Fremont_ave8.644
shoot_tip_38_Fremont8.418
internode_61DAP_Fremont_T8.113
internode_70DAP_Fremont_M8.044
internode_61DAP_Fremont_B8.351
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526117.995
seedling_root_PI1526118.724
seedling_shoot_PI152611_ave8.597
shoot_tip_38_PI1526119.415
internode_61DAP_PI152611_T8.091
internode_70DAP_PI152611_M8.185
internode_61DAP_PI152611_B8.043
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552309.399
seedling_root_PI4552308.417
seedling_shoot_PI455230_ave8.503
shoot_tip_38DAP_ PI4552308.098
internode_61DAP_PI4552308.111
internode_70DAP_PI455230_M8.221
internode_61DAP_PI455230_B8.686
pith_70DAP_PI455230_M8.621
pith_70DAP_PI455230_B8.551
pith_60DAP_PI455230_ave8.591
rind_70DAP_PI455230_T8.366
rind_70DAP_PI455230_M8.616
rind_70DAP_PI455230_B8.553
rind_60DAP_PI455230_ave8.345
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1598.041
seedling_root_R1598.658
seedling_shoot_R159_ave8.305
shoot_tip_38DAP_ R1599.144
internode_61DAP_R159_T7.951
internode_61DAP_R159_B8.459
pith_70DAP_R159_T8.251
pith_70DAP_R159_B8.502
pith_60DAP_R1598.41
rind_70DAP_R159_T8.465
rind_70DAP_R159_B8.392
rind_60DAP_R1598.547

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