miRNA detail annotation

Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image

2.Location informaition

Type	Chromosome	Start	End	Strand	SNP(TSS up 2kb)	SNP(gene body)
mature	chr10	4424908	4424928	+
precursor	chr10	4424888	4425015	+	more details in SorGSD	more details in SorGSD

3.miRNA sequence

>mature_sequence

UUCCACAGCUUUCUUGAACUG

>precursor_sequence

AGAUGGCCUUCUUUGUGAUCUUCCACAGCUUUCUUGAACUGCAUCUCUAAGAGGAGCAGCUUGAACUCUCUACCUGCAUGAGCAGGUGCAGUUCAA
UAAAGCUGUGGGAAACUGCAGAGAGAGGCCAA

4.Target gene

Target gene	Expectation	UPE	miRNA_aligned start-end	Target_aligned start-end	Aligned Fragment: miRNA-Target
Sobic.004G335200	0.0	19.298	20-1	2688-2707	UCAAGUUCUUUCGACACCUU \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| AGUUCAAGAAAGCUGUGGAA
Sobic.004G180900	2.5	21.237	21-1	1489-1509	GUCAAGUUCUUUCGACACCUU \|\|=\|\|*\|\|\|=\|\|\|\|\|\|\|\|\|\|\| CAUUUGAAGGAAGCUGUGGAA
Sobic.004G180900	2.5	21.237	21-1	1616-1636	GUCAAGUUCUUUCGACACCUU \|\|=\|\|*\|\|\|=\|\|\|\|\|\|\|\|\|\|\| CAUUUGAAGGAAGCUGUGGAA
Sobic.009G093900	3.0	22.892	20-1	811-830	UCAAGUUCUUUCGACACCUU \|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|=\|\|* AGUUUAAGAAAGCUGUUGAU
Sobic.001G139800	2.0	12.472	21-1	718-739	GUCAAGUUCUUUCG-ACACCUU \|=\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\| CCGUUCAAGAAAGCCUGUGGAA
Sobic.005G150900	2.0	22.619	21-1	772-793	GUCAAGUUCUUUCG-ACACCUU \|=\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\| CCGUUCAAGAAAGCAUGUGGAA
Sobic.004G317000	2.0	20.182	21-1	721-742	GUCAAGUUCUUUCG-ACACCUU \|=\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\| CCGUUCAAGAAAGCCUGUGGAA
Sobic.010G013500	2.0	16.833	21-1	870-891	GUCAAGUUCUUUCG-ACACCUU \|=\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\| CCGUUCAAGAAAGCCUGUGGAA
Sobic.004G317000	2.0	20.182	21-1	721-742	GUCAAGUUCUUUCG-ACACCUU \|=\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\| CCGUUCAAGAAAGCCUGUGGAA
Sobic.010G077200	2.0	19.428	21-1	1307-1328	GUCAAGUUCUUUCG-ACACCUU \|=\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\| CCGUUCAAGAAAGCCUGUGGAA
Sobic.004G269900	2.0	21.781	21-1	1119-1140	GUCAAGUUCUUUCG-ACACCUU \|=\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\| CCGUUCAAGAAAGCCUGUGGAA
Sobic.003G183900	3.0	21.195	20-1	1399-1418	UCAAGUUCUUUCGACACCUU \|\|\|\|\|\|\|\|\|*\|\|=\|\|\|=\|\|\| AGUUCAAGAUAGUUGUUGAA
Sobic.001G104500	2.0	24.333	19-1	1127-1146	CAAGUUCUUUCG-ACACCUU \|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\| GUUCAAGAAAGCAUGUGGAA
Sobic.003G361800	3.0	21.509	20-1	574-593	UCAAGUUCUUUCGACACCUU \|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\| AGUUCAAGAGUGCUGUGGUA
Sobic.001G145000	3.0	11.828	20-1	1049-1068	UCAAGUUCUUUCGACACCUU \|\|\|\|==*\|\|==\|\|\|\|\|\|\|\|\| AGUUUGUGAGGGCUGUGGAA
Sobic.004G149200	3.0	19.236	20-1	1154-1173	UCAAGUUCUUUCGACACCUU \|\|\|\|**=\|\|\|\|\|\|\|\|\|\|\|\|= AGUUGUGGAAAGCUGUGGAG
Sobic.007G216300	3.0	22.948	20-1	1633-1652	UCAAGUUCUUUCGACACCUU \|\|**\|\|\|\|\|\|=\|\|\|\|\|\|\|\|= AGAGCAAGAAGGCUGUGGAG
Sobic.003G371600	3.0	14.178	20-1	202-221	UCAAGUUCUUUCGACACCUU \|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|= AGUACAGAAAAGCUGUGGAG
Sobic.004G305600	3.0	11.934	20-1	1942-1961	UCAAGUUCUUUCGACACCUU \|\|**=\|\|\|\|\|\|\|\|\|\|\|\|\|\|= AGGGUAAGAAAGCUGUGGAG
Sobic.001G227800	3.0	11.058	20-1	1014-1033	UCAAGUUCUUUCGACACCUU \|\|\|\|\|\|\|*\|\|\|==\|\|\|\|\|\|= AGUUCAACAAAUUUGUGGAG
Sobic.006G215800	3.0	14.96	20-1	411-430	UCAAGUUCUUUCGACACCUU \|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\| ACUUCAUGAAAACUGUGGAA
Sobic.007G226300	3.0	21.04	20-1	1002-1021	UCAAGUUCUUUCGACACCUU \|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\| AGCUCAAGUUAGCUGUGGAA

5.Secondary structure

6.GSE32458

null

7.GSE49879

null

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