Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr0746586054658625+
precursorchr0746585424658625+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
GUGAAGUGCUUGGGGGAACUC
>precursor_sequence
GUUCCCUUCAAGCACUUCACAUGGAGCAUUAUUUGUCUUGGAGAAAGCUUAAUUUGAUGCAUUGUGAAGUGCUUGGGGGAACUC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end		Target_aligned
start-end		Aligned Fragment:
miRNA-Target
Sobic.001G0943001.024.88421-1702-722

CUCAAGGGGGUUCGUGAAGUG
|||||||=||||||||||||=
GAGUUCCUCCAAGCACUUCAU

Sobic.001G4708002.020.87921-1341-361

CUCAAGGGGGUUCGUGAAGUG
|||||=||||||*|||||||=
GAGUUUCCCCAAACACUUCAU

Sobic.002G2598003.019.83921-1516-536

CUCAAGGGGGUUCGUGAAGUG
||||||=|=*||||||||||*
GAGUUCUCUGAAGCACUUCAA

Sobic.008G0705003.016.89321-1904-924

CUCAAGGGGGUUCGUGAAGUG
||||||=*=|||||=|||||=
GAGUUCUGUCAAGCGCUUCAU

Sobic.002G3568002.518.49820-1866-885

UCAAGGGGGUUCGUGAAGUG
|*|||=||||=||||||=||
ACUUCUCCCAGGCACUUUAC

Sobic.001G4709003.013.99721-11449-1469

CUCAAGGGGGUUCGUGAAGUG
||||||*|||||*|||||||*
GAGUUCACCCAAACACUUCAG

Sobic.001G4709003.019.32121-11545-1565

CUCAAGGGGGUUCGUGAAGUG
||||||*|||||*|||||||*
GAGUUCACCCAAACACUUCAG

Sobic.001G4709003.013.99721-11451-1471

CUCAAGGGGGUUCGUGAAGUG
||||||*|||||*|||||||*
GAGUUCACCCAAACACUUCAG

Sobic.001G4709003.019.32121-11547-1567

CUCAAGGGGGUUCGUGAAGUG
||||||*|||||*|||||||*
GAGUUCACCCAAACACUUCAG

Sobic.001G2875003.023.76720-11369-1388

UCAAGGGGGUUCGUGAAGUG
*||||==*||||||||||||
UGUUCUUACAAGCACUUCAC

Sobic.003G0154003.017.4320-1498-517

UCAAGGGGGUUCGUGAAGUG
=||||||*||||*|||||||
CGUUCCCACAAGAACUUCAC

Sobic.001G3411003.018.27820-1937-956

UCAAGGGGGUUCGUGAAGUG
|*||*|==||||||||||||
ACUUGCUUCAAGCACUUCAC

Sobic.001G3411003.018.27820-11075-1094

UCAAGGGGGUUCGUGAAGUG
|*||*|==||||||||||||
ACUUGCUUCAAGCACUUCAC


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24006.487
seedling_root_AR2400_ave5.073
seedling_shoot_AR2400_ave5.940
shoot_tip_38_AR24005.833
internode_61DAP_AR2400_T6.083
internode_70DAP_AR2400_M6.577
internode_61DAP_AR2400_B5.416
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas5.685
seedling_root_Atlas5.531
seedling_shoot_Atlas_ave5.377
shoot_tip_38_Atlas5.312
internode_61DAP_Atlas_T4.538
internode_70DAP_Atlas_M6.352
internode_61DAP_Atlas_B5.416
pith_70DAP_Atlas_T5.661
pith_70DAP_Atlas_M5.137
pith_70DAP_Atlas_B6.169
pith_60DAP_Atlas_ave5.860
rind_70DAP_Atlas_T5.949
rind_70DAP_Atlas_M5.578
rind_70DAP_Atlas_B5.401
rind_60DAP_Atlas_ave5.584
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont5.455
seedling_root_Fremont_ave5.418
seedling_shoot_Fremont_ave5.477
shoot_tip_38_Fremont5.036
internode_61DAP_Fremont_T6.315
internode_70DAP_Fremont_M6.17
internode_61DAP_Fremont_B5.45
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526114.871
seedling_root_PI1526115.967
seedling_shoot_PI152611_ave5.766
shoot_tip_38_PI1526115.468
internode_61DAP_PI152611_T5.827
internode_70DAP_PI152611_M6.238
internode_61DAP_PI152611_B5.801
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552305.337
seedling_root_PI4552305.345
seedling_shoot_PI455230_ave5.071
shoot_tip_38DAP_ PI4552306.122
internode_61DAP_PI4552306.414
internode_70DAP_PI455230_M6.207
internode_61DAP_PI455230_B5.453
pith_70DAP_PI455230_M5.457
pith_70DAP_PI455230_B5.685
pith_60DAP_PI455230_ave5.399
rind_70DAP_PI455230_T5.062
rind_70DAP_PI455230_M5.407
rind_70DAP_PI455230_B6.241
rind_60DAP_PI455230_ave5.751
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1596.237
seedling_root_R1595.044
seedling_shoot_R159_ave6.310
shoot_tip_38DAP_ R1594.648
internode_61DAP_R159_T6.146
internode_61DAP_R159_B5.907
pith_70DAP_R159_T6.226
pith_70DAP_R159_B5.029
pith_60DAP_R1595.687
rind_70DAP_R159_T6.229
rind_70DAP_R159_B5.345
rind_60DAP_R1596.542

All copyright are reserved by Prof. Zhen Su's lab at China Agricultural University | 2015 IE 10 Above and Chrome are suggested For suggestions,please contact web Administrator Tian Tian