Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr0746582954658315+
precursorchr0746582364658315+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
GUGAAGUGUUUGGAGGAACUC
>precursor_sequence
GUUCCCUUCAAGCACUUCACAUGAAGCUUCACAUUGGCAGAUGUAGUCUUGAGACCAAUGUGAAGUGUUUGGAGGAACUC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.001G0943001.024.88421-1702-722

CUCAAGGAGGUUUGUGAAGUG
||||||||||||=|||||||=
GAGUUCCUCCAAGCACUUCAU

Sobic.001G4708002.020.87921-1341-361

CUCAAGGAGGUUUGUGAAGUG
|||||=|*||||||||||||=
GAGUUUCCCCAAACACUUCAU

Sobic.006G1681003.010.45220-11652-1671

UCAAGGAGGUUUGUGAAGUG
=|||=|||=|||||=||=||
CGUUUCUCUAAACAUUUUAC

Sobic.003G3124002.511.9620-11063-1082

UCAAGGAGGUUUGUGAAGUG
|*||||||=|||==||||||
AAUUCCUCUAAAUGCUUCAC

Sobic.003G3124002.511.9620-11206-1225

UCAAGGAGGUUUGUGAAGUG
|*||||||=|||==||||||
AAUUCCUCUAAAUGCUUCAC

Sobic.007G1454003.015.38520-12486-2505

UCAAGGAGGUUUGUGAAGUG
||||=||=||=|==|||||=
AGUUUCUUCAGAUGCUUCAU

Sobic.001G4709003.013.99721-11449-1469

CUCAAGGAGGUUUGUGAAGUG
||||||**||||||||||||*
GAGUUCACCCAAACACUUCAG

Sobic.001G4709003.019.32121-11545-1565

CUCAAGGAGGUUUGUGAAGUG
||||||**||||||||||||*
GAGUUCACCCAAACACUUCAG

Sobic.001G4709003.013.99721-11451-1471

CUCAAGGAGGUUUGUGAAGUG
||||||**||||||||||||*
GAGUUCACCCAAACACUUCAG

Sobic.001G4709003.019.32121-11547-1567

CUCAAGGAGGUUUGUGAAGUG
||||||**||||||||||||*
GAGUUCACCCAAACACUUCAG

Sobic.010G2616003.019.08920-11129-1148

UCAAGGAGGUUUGUGAAGUG
||||=||==*=|||||||||
AGUUUCUUUUGACACUUCAC

Sobic.001G2875003.023.76720-11369-1388

UCAAGGAGGUUUGUGAAGUG
*||||=|*|||=||||||||
UGUUCUUACAAGCACUUCAC

Sobic.001G3411003.018.27820-1937-956

UCAAGGAGGUUUGUGAAGUG
|*||*||=|||=||||||||
ACUUGCUUCAAGCACUUCAC

Sobic.001G3411003.018.27820-11075-1094

UCAAGGAGGUUUGUGAAGUG
|*||*||=|||=||||||||
ACUUGCUUCAAGCACUUCAC

Sobic.004G2445002.519.12519-11772-1791

CAAGGAGGU-UUGUGAAGUG
|||||||||*|||||||||=
GUUCCUCCACAACACUUCAU


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24003.147
seedling_root_AR2400_ave2.855
seedling_shoot_AR2400_ave3.019
shoot_tip_38_AR24003.274
internode_61DAP_AR2400_T2.781
internode_70DAP_AR2400_M3.249
internode_61DAP_AR2400_B3.048
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas2.986
seedling_root_Atlas2.598
seedling_shoot_Atlas_ave2.884
shoot_tip_38_Atlas3.144
internode_61DAP_Atlas_T2.948
internode_70DAP_Atlas_M3.388
internode_61DAP_Atlas_B3.081
pith_70DAP_Atlas_T3.12
pith_70DAP_Atlas_M3.059
pith_70DAP_Atlas_B2.96
pith_60DAP_Atlas_ave2.995
rind_70DAP_Atlas_T3.017
rind_70DAP_Atlas_M2.829
rind_70DAP_Atlas_B2.99
rind_60DAP_Atlas_ave2.898
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont2.943
seedling_root_Fremont_ave2.852
seedling_shoot_Fremont_ave3.050
shoot_tip_38_Fremont2.948
internode_61DAP_Fremont_T3.462
internode_70DAP_Fremont_M3.257
internode_61DAP_Fremont_B3.033
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526113.024
seedling_root_PI1526112.81
seedling_shoot_PI152611_ave2.987
shoot_tip_38_PI1526112.809
internode_61DAP_PI152611_T3.117
internode_70DAP_PI152611_M2.85
internode_61DAP_PI152611_B2.815
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552302.955
seedling_root_PI4552303.269
seedling_shoot_PI455230_ave2.678
shoot_tip_38DAP_ PI4552302.846
internode_61DAP_PI4552302.91
internode_70DAP_PI455230_M3.005
internode_61DAP_PI455230_B2.96
pith_70DAP_PI455230_M2.726
pith_70DAP_PI455230_B3.066
pith_60DAP_PI455230_ave2.877
rind_70DAP_PI455230_T3.097
rind_70DAP_PI455230_M2.962
rind_70DAP_PI455230_B2.96
rind_60DAP_PI455230_ave2.970
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1593.121
seedling_root_R1592.995
seedling_shoot_R159_ave2.883
shoot_tip_38DAP_ R1592.91
internode_61DAP_R159_T2.909
internode_61DAP_R159_B3.052
pith_70DAP_R159_T3.318
pith_70DAP_R159_B3.009
pith_60DAP_R1592.949
rind_70DAP_R159_T2.932
rind_70DAP_R159_B2.974
rind_60DAP_R1593.06

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