Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr065876140358761423+
precursorchr065876134358761423+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
GUGAAGUGUUUGGGGGAACUC
>precursor_sequence
GUUCCCUUCAAGCACUUCACAUGAGGCACCAUUCAAACUCUGUUUAAGAUUAGGUGUAAUGUGAAGUGUUUGGGGGAACUC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.001G4708001.020.87921-1341-361

CUCAAGGGGGUUUGUGAAGUG
|||||=||||||||||||||=
GAGUUUCCCCAAACACUUCAU

Sobic.001G0943001.524.88421-1702-722

CUCAAGGGGGUUUGUGAAGUG
|||||||=||||=|||||||=
GAGUUCCUCCAAGCACUUCAU

Sobic.001G4709002.013.99721-11449-1469

CUCAAGGGGGUUUGUGAAGUG
||||||*|||||||||||||*
GAGUUCACCCAAACACUUCAG

Sobic.001G4709002.019.32121-11545-1565

CUCAAGGGGGUUUGUGAAGUG
||||||*|||||||||||||*
GAGUUCACCCAAACACUUCAG

Sobic.001G4709002.013.99721-11451-1471

CUCAAGGGGGUUUGUGAAGUG
||||||*|||||||||||||*
GAGUUCACCCAAACACUUCAG

Sobic.001G4709002.019.32121-11547-1567

CUCAAGGGGGUUUGUGAAGUG
||||||*|||||||||||||*
GAGUUCACCCAAACACUUCAG

Sobic.002G3568003.018.49820-1866-885

UCAAGGGGGUUUGUGAAGUG
|*|||=||||==|||||=||
ACUUCUCCCAGGCACUUUAC

Sobic.003G3124003.011.9620-11063-1082

UCAAGGGGGUUUGUGAAGUG
|*||||=|=|||==||||||
AAUUCCUCUAAAUGCUUCAC

Sobic.003G3124003.011.9620-11206-1225

UCAAGGGGGUUUGUGAAGUG
|*||||=|=|||==||||||
AAUUCCUCUAAAUGCUUCAC

Sobic.004G2445003.019.12519-11772-1791

CAAGGGGGU-UUGUGAAGUG
|||||=|||*|||||||||=
GUUCCUCCACAACACUUCAU


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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