Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr0365218606521880+
precursorchr0365218416521979+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UCCAAAGGGAUCGCAUUGAUC
>precursor_sequence
ACAAUGCCUGGAGGAAGCAUCCAAAGGGAUCGCAUUGAUCCGUCACUCCUUCCAUUCUAUCAUGGGUGGUCGUCGUCUACAAGGACUUCGUUCCCG
ACGGAUCAUGCGAUCCUUUUGGAGGCUUCCUCUAGACAUUACU

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end		Target_aligned
start-end		Aligned Fragment:
miRNA-Target
Sobic.009G0453002.020.72720-11846-1865

UAGUUACGCUAGGGAAACCU
=*||||||||||||||||||
GACAAUGCGAUCCCUUUGGA

Sobic.009G0453002.020.72720-11846-1865

UAGUUACGCUAGGGAAACCU
=*||||||||||||||||||
GACAAUGCGAUCCCUUUGGA

Sobic.006G0560002.022.4720-12494-2513

UAGUUACGCUAGGGAAACCU
=*||||||||||||||||||
GACAAUGCGAUCCCUUUGGA

Sobic.003G4434002.519.93621-1102-122

CUAGUUACGCUAGGGAAACCU
||||=||*||||||||||||*
GAUCGAUCCGAUCCCUUUGGU

Sobic.003G0122003.015.42220-11990-2009

UAGUUACGCUAGGGAAACCU
|*||||*||||||=|||||=
AACAAUACGAUCCUUUUGGG

Sobic.003G0122003.015.42220-11994-2013

UAGUUACGCUAGGGAAACCU
|*||||*||||||=|||||=
AACAAUACGAUCCUUUUGGG

Sobic.003G0122003.015.42220-12067-2086

UAGUUACGCUAGGGAAACCU
|*||||*||||||=|||||=
AACAAUACGAUCCUUUUGGG


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24003.626
seedling_root_AR2400_ave3.706
seedling_shoot_AR2400_ave4.206
shoot_tip_38_AR24002.796
internode_61DAP_AR2400_T3.147
internode_70DAP_AR2400_M4.854
internode_61DAP_AR2400_B4.737
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas3.581
seedling_root_Atlas3.667
seedling_shoot_Atlas_ave4.447
shoot_tip_38_Atlas3.407
internode_61DAP_Atlas_T6.878
internode_70DAP_Atlas_M4.445
internode_61DAP_Atlas_B6.069
pith_70DAP_Atlas_T4.066
pith_70DAP_Atlas_M5.427
pith_70DAP_Atlas_B5.98
pith_60DAP_Atlas_ave6.780
rind_70DAP_Atlas_T4.999
rind_70DAP_Atlas_M5.738
rind_70DAP_Atlas_B6.71
rind_60DAP_Atlas_ave6.008
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont3.924
seedling_root_Fremont_ave3.269
seedling_shoot_Fremont_ave5.371
shoot_tip_38_Fremont2.935
internode_61DAP_Fremont_T3.876
internode_70DAP_Fremont_M5.584
internode_61DAP_Fremont_B3.111
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526114.167
seedling_root_PI1526113.072
seedling_shoot_PI152611_ave3.787
shoot_tip_38_PI1526113.692
internode_61DAP_PI152611_T4.607
internode_70DAP_PI152611_M4.184
internode_61DAP_PI152611_B5.236
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552303.779
seedling_root_PI4552303.81
seedling_shoot_PI455230_ave4.340
shoot_tip_38DAP_ PI4552303.984
internode_61DAP_PI4552305.263
internode_70DAP_PI455230_M6.76
internode_61DAP_PI455230_B5.764
pith_70DAP_PI455230_M5.274
pith_70DAP_PI455230_B6.741
pith_60DAP_PI455230_ave6.027
rind_70DAP_PI455230_T7.377
rind_70DAP_PI455230_M6.704
rind_70DAP_PI455230_B5.894
rind_60DAP_PI455230_ave6.538
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1593.892
seedling_root_R1593.358
seedling_shoot_R159_ave4.077
shoot_tip_38DAP_ R1593.236
internode_61DAP_R159_T3.64
internode_61DAP_R159_B5.907
pith_70DAP_R159_T6.97
pith_70DAP_R159_B6.641
pith_60DAP_R1596.963
rind_70DAP_R159_T6.828
rind_70DAP_R159_B7.081
rind_60DAP_R1597.535

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