Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr064638640046386421-
precursorchr064638631146386462-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
GGCAUGGGAACAUGUAGGAAGG
>precursor_sequence
GUGGGCAUGGAAGAGGAAGAAAAGAGGGUCUAAGAGCAGUGGGCAUGGGAACAUGUAGGAAGGCCUUUGAGAUGGAAAGCUCAUUUUGGGUCUUCC
UGAUGCCUCCCAUGCCUAUUGUUCUUAGGUGCUCCUUCCUCUUGCUUUUGGCUCAC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.006G0847001.016.53622-1570-591

GGAAGGAUGUACAAGGGUACGG
|=|||||=||||||||||||||
CUUUCCUCCAUGUUCCCAUGCC

Sobic.003G2075003.016.58821-163-83

GAAGGAUGUACAAGGGUACGG
||||=|=|||||||==||||*
CUUCUUGCAUGUUCUUAUGCA

Sobic.003G2075003.016.58821-163-83

GAAGGAUGUACAAGGGUACGG
||||=|=|||||||==||||*
CUUCUUGCAUGUUCUUAUGCA

Sobic.006G0840003.015.2222-11138-1159

GGAAGGAUGUACAAGGGUACGG
|=|||||=||||||||==|||*
CUUUCCUCCAUGUUCCUGUGCA

Sobic.006G1100003.011.65820-1795-814

AAGGAUGUACAAGGGUACGG
|||||||||||||==||=|=
UUCCUACAUGUUCUUAUUCU

Sobic.007G0113003.017.23420-12580-2599

AAGGAUGUACAAGGGUACGG
||=||=|||||||=||*|||
UUUCUGCAUGUUCUCAAGCC

Sobic.006G2324003.013.87422-12684-2705

GGAAGGAUGUACAAGGGUACGG
|*|*=||||=|||||=||||||
CAUAUCUACCUGUUCUCAUGCC

Sobic.006G1018003.013.70820-12888-2907

AAGGAUGUACAAGGGUACGG
||||||||*|*||||||||*
UUCCUACAGGAUCCCAUGCA

Sobic.006G1018003.023.6420-13494-3513

AAGGAUGUACAAGGGUACGG
||||||||*|*||||||||*
UUCCUACAGGAUCCCAUGCA


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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