miRNA detail annotation

Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image

2.Location informaition

Type	Chromosome	Start	End	Strand	SNP(TSS up 2kb)	SNP(gene body)
mature	chr04	67015299	67015318	-
precursor	chr04	67015298	67015416	-	more details in SorGSD	more details in SorGSD

3.miRNA sequence

>mature_sequence

AGAAUCUUGAUGAUGCUGCA

>precursor_sequence

GUGCAGCACCAUCAAGAUUCACAUGGUCCAACUCAUGCAUCUUCAGUGAUGCUCAUGUGAUGGCUCGCAGUUGCUAUAUAUGCAUAUGUGAUGAGA
UGAGAAUCUUGAUGAUGCUGCAU

4.Target gene

Target gene	Expectation	UPE	miRNA_aligned start-end	Target_aligned start-end	Aligned Fragment: miRNA-Target
Sobic.001G036800	0.5	24.562	20-1	1606-1625	ACGUCGUAGUAGUUCUAAGA \|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\| UGCAGCAUCAUCAGGAUUCU
Sobic.002G083600	0.5	16.182	20-1	1589-1608	ACGUCGUAGUAGUUCUAAGA \|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\| UGCAGCAUCAUCAGGAUUCU
Sobic.009G024600	0.5	11.277	20-1	1972-1991	ACGUCGUAGUAGUUCUAAGA \|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\| UGCAGCAUCAUCAGGAUUCU
Sobic.009G024600	0.5	11.277	20-1	2017-2036	ACGUCGUAGUAGUUCUAAGA \|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\| UGCAGCAUCAUCAGGAUUCU
Sobic.009G024600	0.5	11.277	20-1	2020-2039	ACGUCGUAGUAGUUCUAAGA \|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\| UGCAGCAUCAUCAGGAUUCU
Sobic.009G024600	0.5	11.277	20-1	2434-2453	ACGUCGUAGUAGUUCUAAGA \|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\| UGCAGCAUCAUCAGGAUUCU
Sobic.006G240700	2.5	13.723	20-1	1822-1841	ACGUCGUAGUAGUUCUAAGA \|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|* UGCAGCAUCAUCACGAUUCC
Sobic.006G240700	2.5	13.723	20-1	1966-1985	ACGUCGUAGUAGUUCUAAGA \|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|* UGCAGCAUCAUCACGAUUCC
Sobic.007G197300	3.0	16.212	20-1	922-941	ACGUCGUAGUAGUUCUAAGA \|\|\|=\|==\|=\|\|\|=\|\|\|\|\|=\| UGCGGUGUUAUCGAGAUUUU
Sobic.001G298900	2.0	20.15	20-1	1711-1730	ACGUCGUAGUAGUUCUAAGA \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| UGGAGCACCAUCAAGAUUCU
Sobic.001G298900	2.0	20.15	20-1	1711-1730	ACGUCGUAGUAGUUCUAAGA \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| UGGAGCACCAUCAAGAUUCU
Sobic.004G044300	2.5	24.493	20-1	746-765	ACGUCGUAGUAGUUCUAAGA \|\|\|*\|\|\|\|\|=\|\|=\|\|\|\|\|\|\| UGCUGCAUCGUCCAGAUUCU
Sobic.010G150900	3.0	23.694	20-1	2086-2105	ACGUCGUAGUAGUUCUAAGA \|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\| GGCAGCUUCAUCUAGAUUCU
Sobic.002G029200	3.0	18.969	20-1	1371-1390	ACGUCGUAGUAGUUCUAAGA \|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|=\| UGCAGUUUCAUCUAGAUUUU
Sobic.002G154600	3.0	22.099	20-1	294-313	ACGUCGUAGUAGUUCUAAGA \|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\| UACAACAUCACCAAGAUUCU

5.Secondary structure

6.GSE32458

null

7.GSE49879

null

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