Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr0458532985853318-
precursorchr0458532935853400-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UGAUUGAGCCGCGCCAAUAUC
>precursor_sequence
GCGAGCGAUAUUGGUGAGGUUCAAUCAGAUCAUCAGAUGAUGUAUUUUAAAUUUACAUGCAUGAAGGUGAAUCCCCAGGGACUGAUUGAGCCGCGC
CAAUAUCACUUC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.006G1729000.024.5921-11415-1435

CUAUAACCGCGCCGAGUUAGU
|||||||||||||||||||||
GAUAUUGGCGCGGCUCAAUCA

Sobic.001G5139001.018.84521-1945-965

CUAUAACCGCGCCGAGUUAGU
|||||||||*|||||||||||
GAUAUUGGCACGGCUCAAUCA

Sobic.001G5412003.024.99321-11195-1215

CUAUAACCGCGCCGAGUUAGU
||||*|||||||||||||*=|
GAUACUGGCGCGGCUCAACUA

Sobic.008G1135003.020.3320-1877-896

UAUAACCGCGCCGAGUUAGU
=|=||||=||=|||||||||
CUGUUGGUGCUGCUCAAUCA


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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