Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr011560873715608757-
precursorchr011560873515608815-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
GGAUUGAGCCGCGUCAAUAUC
>precursor_sequence
GGUAUUGGCGCGCCUCAAUCCGAAGGCGUGGCUGAUUUGGCAUGGCAGCCAUGUUCUUGGAUUGAGCCGCGUCAAUAUCUC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.006G1729001.524.5921-11415-1435

CUAUAACUGCGCCGAGUUAGG
|||||||=||||||||||||*
GAUAUUGGCGCGGCUCAAUCA

Sobic.001G5139002.518.84521-1945-965

CUAUAACUGCGCCGAGUUAGG
|||||||=|*||||||||||*
GAUAUUGGCACGGCUCAAUCA


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24005.737
seedling_root_AR2400_ave6.191
seedling_shoot_AR2400_ave5.538
shoot_tip_38_AR24003.909
internode_61DAP_AR2400_T7.294
internode_70DAP_AR2400_M4.343
internode_61DAP_AR2400_B4.065
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas5.189
seedling_root_Atlas6.881
seedling_shoot_Atlas_ave5.658
shoot_tip_38_Atlas4.573
internode_61DAP_Atlas_T5.676
internode_70DAP_Atlas_M4.105
internode_61DAP_Atlas_B3.903
pith_70DAP_Atlas_T6.323
pith_70DAP_Atlas_M3.584
pith_70DAP_Atlas_B4.518
pith_60DAP_Atlas_ave4.300
rind_70DAP_Atlas_T4.394
rind_70DAP_Atlas_M3.925
rind_70DAP_Atlas_B3.841
rind_60DAP_Atlas_ave4.024
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont4.108
seedling_root_Fremont_ave5.736
seedling_shoot_Fremont_ave5.888
shoot_tip_38_Fremont5.496
internode_61DAP_Fremont_T5.822
internode_70DAP_Fremont_M3.989
internode_61DAP_Fremont_B4.231
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526115.673
seedling_root_PI1526116.277
seedling_shoot_PI152611_ave5.670
shoot_tip_38_PI1526114.776
internode_61DAP_PI152611_T3.74
internode_70DAP_PI152611_M5.204
internode_61DAP_PI152611_B3.597
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552305.196
seedling_root_PI4552306.362
seedling_shoot_PI455230_ave7.711
shoot_tip_38DAP_ PI4552306.736
internode_61DAP_PI4552304.974
internode_70DAP_PI455230_M5.413
internode_61DAP_PI455230_B4.283
pith_70DAP_PI455230_M4.351
pith_70DAP_PI455230_B4.17
pith_60DAP_PI455230_ave4.340
rind_70DAP_PI455230_T4.941
rind_70DAP_PI455230_M4.772
rind_70DAP_PI455230_B4.403
rind_60DAP_PI455230_ave4.354
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1595.94
seedling_root_R1596.784
seedling_shoot_R159_ave5.546
shoot_tip_38DAP_ R1594.293
internode_61DAP_R159_T6.217
internode_61DAP_R159_B3.99
pith_70DAP_R159_T5.021
pith_70DAP_R159_B4.372
pith_60DAP_R1594.307
rind_70DAP_R159_T4.327
rind_70DAP_R159_B4.263
rind_60DAP_R1594.089

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