Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr046209992262099942-
precursorchr046209990362100021-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
AUGAGCCGAACCAAUAUCACU
>precursor_sequence
UGAGAGAAUAAGACGACAUGGCGUGAUGUUGUUUCGGCUCAUGCAUAUCCUUCUUGAGUGUAUCAUCAGGAAAGAGGCGAUGAGCCGAACCAAUAU
CACUCAUGUAUUCUUCAUUCAUA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end		Target_aligned
start-end		Aligned Fragment:
miRNA-Target
Sobic.003G2153003.019.24721-12586-2606

UCACUAUAACCAAGCCGAGUA
||||=||||||*||||||=|*
AGUGGUAUUGGAUCGGCUUAG

Sobic.003G2156003.019.31921-12605-2625

UCACUAUAACCAAGCCGAGUA
||||=||||||*||||||=|*
AGUGGUAUUGGAUCGGCUUAG

Sobic.008G1136003.018.24220-1485-504

CACUAUAACCAAGCCGAGUA
*||=|=||||||=||=||||
CUGGUGUUGGUUUGGUUCAU

Sobic.007G1812003.017.70321-1424-444

UCACUAUAACCAAGCCGAGUA
|*|||*||||||||||=|=||
ACUGAGAUUGGUUCGGUUUAU


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24007.524
seedling_root_AR2400_ave7.217
seedling_shoot_AR2400_ave7.261
shoot_tip_38_AR24008.368
internode_61DAP_AR2400_T6.579
internode_70DAP_AR2400_M6.671
internode_61DAP_AR2400_B7.771
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas6.466
seedling_root_Atlas5.786
seedling_shoot_Atlas_ave7.387
shoot_tip_38_Atlas5.614
internode_61DAP_Atlas_T8.83
internode_70DAP_Atlas_M8.02
internode_61DAP_Atlas_B6.174
pith_70DAP_Atlas_T6.875
pith_70DAP_Atlas_M4.986
pith_70DAP_Atlas_B5.973
pith_60DAP_Atlas_ave7.848
rind_70DAP_Atlas_T7.909
rind_70DAP_Atlas_M7.346
rind_70DAP_Atlas_B6.449
rind_60DAP_Atlas_ave8.704
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont6.716
seedling_root_Fremont_ave6.065
seedling_shoot_Fremont_ave6.162
shoot_tip_38_Fremont7.032
internode_61DAP_Fremont_T6.703
internode_70DAP_Fremont_M6.396
internode_61DAP_Fremont_B5.234
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526116.628
seedling_root_PI1526116.274
seedling_shoot_PI152611_ave7.559
shoot_tip_38_PI1526115.372
internode_61DAP_PI152611_T7.824
internode_70DAP_PI152611_M7.677
internode_61DAP_PI152611_B7.611
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552307.476
seedling_root_PI4552306.05
seedling_shoot_PI455230_ave7.883
shoot_tip_38DAP_ PI4552307.7
internode_61DAP_PI4552307.223
internode_70DAP_PI455230_M8.069
internode_61DAP_PI455230_B8.235
pith_70DAP_PI455230_M8.122
pith_70DAP_PI455230_B9.479
pith_60DAP_PI455230_ave8.621
rind_70DAP_PI455230_T8.624
rind_70DAP_PI455230_M10.008
rind_70DAP_PI455230_B7.55
rind_60DAP_PI455230_ave8.837
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1596.957
seedling_root_R1596.715
seedling_shoot_R159_ave7.809
shoot_tip_38DAP_ R1597.539
internode_61DAP_R159_T7.367
internode_61DAP_R159_B8.31
pith_70DAP_R159_T8.996
pith_70DAP_R159_B8.298
pith_60DAP_R1597.725
rind_70DAP_R159_T7.877
rind_70DAP_R159_B7.612
rind_60DAP_R1597.419

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