Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr065460911454609134+
precursorchr065460903054609153+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
GUGAGCCGAACCAAUAUCACU
>precursor_sequence
AGGAGGAAGAAGACGACAUGGCGUGGUAUUGUUUCGGCUCAUGUCCUUCUUGCUUCGAGUCUGUCGUCGGAUUUUGGAUGUGAUGUGAGCCGAACC
AAUAUCACUCAUGUAUUCUUCAUUCUGA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end		Target_aligned
start-end		Aligned Fragment:
miRNA-Target
Sobic.003G2153003.019.24721-12586-2606

UCACUAUAACCAAGCCGAGUG
||||=||||||*||||||=|*
AGUGGUAUUGGAUCGGCUUAG

Sobic.003G2156003.019.31921-12605-2625

UCACUAUAACCAAGCCGAGUG
||||=||||||*||||||=|*
AGUGGUAUUGGAUCGGCUUAG


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24008.049
seedling_root_AR2400_ave7.599
seedling_shoot_AR2400_ave7.008
shoot_tip_38_AR24008.493
internode_61DAP_AR2400_T6.553
internode_70DAP_AR2400_M6.647
internode_61DAP_AR2400_B7.864
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas6.954
seedling_root_Atlas6.311
seedling_shoot_Atlas_ave7.470
shoot_tip_38_Atlas5.697
internode_61DAP_Atlas_T9.035
internode_70DAP_Atlas_M8.172
internode_61DAP_Atlas_B6.367
pith_70DAP_Atlas_T7.053
pith_70DAP_Atlas_M5.371
pith_70DAP_Atlas_B5.284
pith_60DAP_Atlas_ave7.714
rind_70DAP_Atlas_T7.639
rind_70DAP_Atlas_M7.43
rind_70DAP_Atlas_B6.304
rind_60DAP_Atlas_ave8.619
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont6.899
seedling_root_Fremont_ave6.328
seedling_shoot_Fremont_ave5.972
shoot_tip_38_Fremont6.895
internode_61DAP_Fremont_T7.057
internode_70DAP_Fremont_M6.558
internode_61DAP_Fremont_B5.149
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526117.099
seedling_root_PI1526115.886
seedling_shoot_PI152611_ave7.361
shoot_tip_38_PI1526116.099
internode_61DAP_PI152611_T7.24
internode_70DAP_PI152611_M7.831
internode_61DAP_PI152611_B7.51
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552307.671
seedling_root_PI4552306.794
seedling_shoot_PI455230_ave7.987
shoot_tip_38DAP_ PI4552307.865
internode_61DAP_PI4552307.256
internode_70DAP_PI455230_M7.894
internode_61DAP_PI455230_B8.189
pith_70DAP_PI455230_M8.387
pith_70DAP_PI455230_B9.319
pith_60DAP_PI455230_ave8.680
rind_70DAP_PI455230_T8.412
rind_70DAP_PI455230_M10.046
rind_70DAP_PI455230_B7.589
rind_60DAP_PI455230_ave8.694
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1597.472
seedling_root_R1596.806
seedling_shoot_R159_ave7.708
shoot_tip_38DAP_ R1597.939
internode_61DAP_R159_T7.115
internode_61DAP_R159_B8.245
pith_70DAP_R159_T8.724
pith_70DAP_R159_B7.902
pith_60DAP_R1597.812
rind_70DAP_R159_T7.438
rind_70DAP_R159_B7.426
rind_60DAP_R1597.667

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