Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr021712574817125768-
precursorchr021712572917125837-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
GAGGUGAGCCGAGCCAAUAUC
>precursor_sequence
AGAACGAGACGACAUGGCAUGGUAUUGACUUGGCUCAUCUCUCAUCCACAGCAAACUUCACAAGUGCCUGAGGUGAGCCGAGCCAAUAUCACUUCA
UGUCAUCUAGCGU

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.005G1982002.523.49621-1599-619

CUAUAACCGAGCCGAGUGGAG
|||=||||||=||*|||=|||
GAUGUUGGCUUGGGUCAUCUC

Sobic.004G3578003.021.50320-177-96

UAUAACCGAGCCGAGUGGAG
*|=||||||||||||=|||*
UUGUUGGCUCGGCUCGCCUG

Sobic.004G3578003.021.50320-177-96

UAUAACCGAGCCGAGUGGAG
*|=||||||||||||=|||*
UUGUUGGCUCGGCUCGCCUG

Sobic.004G3578003.021.50320-177-96

UAUAACCGAGCCGAGUGGAG
*|=||||||||||||=|||*
UUGUUGGCUCGGCUCGCCUG

Sobic.006G0306003.016.86720-13800-3819

UAUAACCGAGCCGAGUGGAG
=||*||||||||=|||=||=
GUACUGGCUCGGUUCAUCUU

Sobic.001G3046003.013.4820-12-21

UAUAACCGAGCCGAGUGGAG
||||*|||*|||=||=||||
AUAUGGGCCCGGUUCGCCUC


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24008.895
seedling_root_AR2400_ave8.037
seedling_shoot_AR2400_ave8.139
shoot_tip_38_AR24008.023
internode_61DAP_AR2400_T8.46
internode_70DAP_AR2400_M7.885
internode_61DAP_AR2400_B8.614
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas8.703
seedling_root_Atlas7.529
seedling_shoot_Atlas_ave8.776
shoot_tip_38_Atlas7.859
internode_61DAP_Atlas_T8.856
internode_70DAP_Atlas_M8.965
internode_61DAP_Atlas_B8.598
pith_70DAP_Atlas_T8.419
pith_70DAP_Atlas_M8.31
pith_70DAP_Atlas_B8.683
pith_60DAP_Atlas_ave9.058
rind_70DAP_Atlas_T8.976
rind_70DAP_Atlas_M8.873
rind_70DAP_Atlas_B9.072
rind_60DAP_Atlas_ave9.297
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont8.284
seedling_root_Fremont_ave8.102
seedling_shoot_Fremont_ave7.892
shoot_tip_38_Fremont7.924
internode_61DAP_Fremont_T8.351
internode_70DAP_Fremont_M8.211
internode_61DAP_Fremont_B7.739
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526118.841
seedling_root_PI1526117.525
seedling_shoot_PI152611_ave8.381
shoot_tip_38_PI1526117.844
internode_61DAP_PI152611_T9.479
internode_70DAP_PI152611_M8.174
internode_61DAP_PI152611_B8.82
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552308.111
seedling_root_PI4552308.172
seedling_shoot_PI455230_ave8.203
shoot_tip_38DAP_ PI4552308.612
internode_61DAP_PI4552308.3
internode_70DAP_PI455230_M8.758
internode_61DAP_PI455230_B9.315
pith_70DAP_PI455230_M9.283
pith_70DAP_PI455230_B9.445
pith_60DAP_PI455230_ave9.324
rind_70DAP_PI455230_T8.93
rind_70DAP_PI455230_M9.768
rind_70DAP_PI455230_B9.079
rind_60DAP_PI455230_ave9.309
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1599.167
seedling_root_R1597.607
seedling_shoot_R159_ave8.446
shoot_tip_38DAP_ R1598.303
internode_61DAP_R159_T7.952
internode_61DAP_R159_B9.046
pith_70DAP_R159_T9.474
pith_70DAP_R159_B9.083
pith_60DAP_R1598.963
rind_70DAP_R159_T8.525
rind_70DAP_R159_B8.504
rind_60DAP_R1598.462

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