Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr0110298951029915-
precursorchr0110298141029916-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UAGCCAAGGAUGAUUUGCCUG
>precursor_sequence
AUAGCCAAGGAUGAUUUGCCUGUAGCAACCUCUGAGUGCUCCUGCUGCCAUGGCAGUCAGGAGCGCCAAGUGGGUGCUUCUCCGGGCAAAUCAUCU
GGGCUAG

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end		Target_aligned
start-end		Aligned Fragment:
miRNA-Target
Sobic.008G1746001.017.84421-1801-821

GUCCGUUUAGUAGGAACCGAU
=|||||||||||=|||||||=
UAGGCAAAUCAUUCUUGGCUG

Sobic.001G1545001.024.32121-11580-1600

GUCCGUUUAGUAGGAACCGAU
=|||||||||||=|||||||=
UAGGCAAAUCAUUCUUGGCUG

Sobic.004G3165002.015.04221-11106-1126

GUCCGUUUAGUAGGAACCGAU
|||||||*||||||||||||*
CAGGCAAUUCAUCCUUGGCUU

Sobic.001G1278002.518.93321-11390-1410

GUCCGUUUAGUAGGAACCGAU
|||||||*||||=|||||||*
CAGGCAAUUCAUUCUUGGCUU

Sobic.001G1278002.518.93321-11393-1413

GUCCGUUUAGUAGGAACCGAU
|||||||*||||=|||||||*
CAGGCAAUUCAUUCUUGGCUU

Sobic.001G1278002.518.93321-11734-1754

GUCCGUUUAGUAGGAACCGAU
|||||||*||||=|||||||*
CAGGCAAUUCAUUCUUGGCUU

Sobic.001G4860003.018.56421-11072-1092

GUCCGUUUAGUAGGAACCGAU
|*|||||=||||||||||||*
CUGGCAACUCAUCCUUGGCUU

Sobic.001G4860003.018.56421-11116-1136

GUCCGUUUAGUAGGAACCGAU
|*|||||=||||||||||||*
CUGGCAACUCAUCCUUGGCUU

Sobic.002G3708003.016.40820-11206-1225

UCCGUUUAGUAGGAACCGAU
*|||||=||||||||||||*
UGGCAACUCAUCCUUGGCUU


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24003.123
seedling_root_AR2400_ave2.889
seedling_shoot_AR2400_ave3.106
shoot_tip_38_AR24004.682
internode_61DAP_AR2400_T3.249
internode_70DAP_AR2400_M3.004
internode_61DAP_AR2400_B2.849
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas2.993
seedling_root_Atlas2.894
seedling_shoot_Atlas_ave3.207
shoot_tip_38_Atlas3.604
internode_61DAP_Atlas_T3.459
internode_70DAP_Atlas_M3.238
internode_61DAP_Atlas_B3.202
pith_70DAP_Atlas_T3.653
pith_70DAP_Atlas_M3.563
pith_70DAP_Atlas_B2.939
pith_60DAP_Atlas_ave3.186
rind_70DAP_Atlas_T3.089
rind_70DAP_Atlas_M3.078
rind_70DAP_Atlas_B2.879
rind_60DAP_Atlas_ave3.222
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont3.295
seedling_root_Fremont_ave2.868
seedling_shoot_Fremont_ave3.288
shoot_tip_38_Fremont3.606
internode_61DAP_Fremont_T3.043
internode_70DAP_Fremont_M3.009
internode_61DAP_Fremont_B3.587
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526113.145
seedling_root_PI1526112.812
seedling_shoot_PI152611_ave2.957
shoot_tip_38_PI1526113.419
internode_61DAP_PI152611_T2.685
internode_70DAP_PI152611_M2.814
internode_61DAP_PI152611_B3.507
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552303.545
seedling_root_PI4552302.892
seedling_shoot_PI455230_ave3.112
shoot_tip_38DAP_ PI4552303.179
internode_61DAP_PI4552303.262
internode_70DAP_PI455230_M3.057
internode_61DAP_PI455230_B3.253
pith_70DAP_PI455230_M3.202
pith_70DAP_PI455230_B3.18
pith_60DAP_PI455230_ave3.204
rind_70DAP_PI455230_T4.252
rind_70DAP_PI455230_M3.226
rind_70DAP_PI455230_B3.351
rind_60DAP_PI455230_ave3.190
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1593.237
seedling_root_R1592.873
seedling_shoot_R159_ave3.442
shoot_tip_38DAP_ R1594.021
internode_61DAP_R159_T3.098
internode_61DAP_R159_B2.901
pith_70DAP_R159_T3.22
pith_70DAP_R159_B3.414
pith_60DAP_R1593.224
rind_70DAP_R159_T3.284
rind_70DAP_R159_B3.194
rind_60DAP_R1593.229

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