Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr063979118439791203+
precursorchr063979114239791313+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UAGCCAAGGAUGACUUGCCU
>precursor_sequence
GAAGAAGAGGGGCCUUGCAUGGUGGCGAGAGCCUGCCUUUGGUAGCCAAGGAUGACUUGCCUACAUGGCAUUGCGAGUUCCGGUUGCAUGGCCAGU
UCAGCUGAGUUUGUGGGCGGUCACCUUGGCUAGCCUGAGUGGCUCUUGCCUGUCAUGGAAGGCCUCUUCUUCUGUC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.004G3165002.015.04220-11107-1126

UCCGUUCAGUAGGAACCGAU
||||||=||||||||||||*
AGGCAAUUCAUCCUUGGCUU

Sobic.008G1746002.017.84420-1802-821

UCCGUUCAGUAGGAACCGAU
||||||*||||=|||||||=
AGGCAAAUCAUUCUUGGCUG

Sobic.001G1545002.024.32120-11581-1600

UCCGUUCAGUAGGAACCGAU
||||||*||||=|||||||=
AGGCAAAUCAUUCUUGGCUG

Sobic.001G1278002.518.93320-11391-1410

UCCGUUCAGUAGGAACCGAU
||||||=||||=|||||||*
AGGCAAUUCAUUCUUGGCUU

Sobic.001G1278002.518.93320-11394-1413

UCCGUUCAGUAGGAACCGAU
||||||=||||=|||||||*
AGGCAAUUCAUUCUUGGCUU

Sobic.001G1278002.518.93320-11735-1754

UCCGUUCAGUAGGAACCGAU
||||||=||||=|||||||*
AGGCAAUUCAUUCUUGGCUU

Sobic.001G4860003.018.56420-11073-1092

UCCGUUCAGUAGGAACCGAU
*|||||*||||||||||||*
UGGCAACUCAUCCUUGGCUU

Sobic.001G4860003.018.56420-11117-1136

UCCGUUCAGUAGGAACCGAU
*|||||*||||||||||||*
UGGCAACUCAUCCUUGGCUU

Sobic.002G3708003.016.40820-11206-1225

UCCGUUCAGUAGGAACCGAU
*|||||*||||||||||||*
UGGCAACUCAUCCUUGGCUU


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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