Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr063979125239791271+
precursorchr063979114239791313+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
GGGCGGUCACCUUGGCUAGC
>precursor_sequence
GAAGAAGAGGGGCCUUGCAUGGUGGCGAGAGCCUGCCUUUGGUAGCCAAGGAUGACUUGCCUACAUGGCAUUGCGAGUUCCGGUUGCAUGGCCAGU
UCAGCUGAGUUUGUGGGCGGUCACCUUGGCUAGCCUGAGUGGCUCUUGCCUGUCAUGGAAGGCCUCUUCUUCUGUC

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.001G5111003.023.28620-12125-2144

CGAUCGGUUCCACUGGCGGG
|||=|||||||*|||||=|*
GCUGGCCAAGGCGACCGUCG

Sobic.004G2213003.022.18820-1403-422

CGAUCGGUUCCACUGGCGGG
|||=||||||*||||=|||*
GCUGGCCAAGAUGACUGCCG

Sobic.004G2213003.022.18820-1231-250

CGAUCGGUUCCACUGGCGGG
|||=||||||*||||=|||*
GCUGGCCAAGAUGACUGCCG

Sobic.004G2213003.022.18920-1201-220

CGAUCGGUUCCACUGGCGGG
|||=||||||*||||=|||*
GCUGGCCAAGAUGACUGCCG

Sobic.006G2283002.517.10120-1181-200

CGAUCGGUUCCACUGGCGGG
||||||||||*|*=||||||
GCUAGCCAAGCUAGCCGCCC

Sobic.001G3064003.019.97320-1941-960

CGAUCGGUUCCACUGGCGGG
||*|||||||=||=||||=|
GCAAGCCAAGUUGGCCGCUC


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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