Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr105586925855869278-
precursorchr105586917755869278-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
CAGCCAAGGAUGACUUGCCGG
>precursor_sequence
CAGCCAAGGAUGACUUGCCGGAUAUGUGCAUGCAUAUGUUACAAGGCAGCAUAUGCACCCUGUUACAAGCCUGCCUGUUCUCCGGCAAGUUGUCCU
UGGCUA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.001G4860002.518.56421-11072-1092

GGCCGUUCAGUAGGAACCGAC
|=|||||*||||||||||||=
CUGGCAACUCAUCCUUGGCUU

Sobic.001G4860002.518.56421-11116-1136

GGCCGUUCAGUAGGAACCGAC
|=|||||*||||||||||||=
CUGGCAACUCAUCCUUGGCUU

Sobic.008G1746002.517.84420-1802-821

GCCGUUCAGUAGGAACCGAC
*|||||*||||=||||||||
AGGCAAAUCAUUCUUGGCUG

Sobic.002G3708002.516.40820-11206-1225

GCCGUUCAGUAGGAACCGAC
=|||||*||||||||||||=
UGGCAACUCAUCCUUGGCUU

Sobic.002G0385002.520.60120-11209-1228

GCCGUUCAGUAGGAACCGAC
||||||*||||=|||||||*
CGGCAACUCAUUCUUGGCUC

Sobic.002G0385002.520.60120-11218-1237

GCCGUUCAGUAGGAACCGAC
||||||*||||=|||||||*
CGGCAACUCAUUCUUGGCUC

Sobic.001G1545002.524.32120-11581-1600

GCCGUUCAGUAGGAACCGAC
*|||||*||||=||||||||
AGGCAAAUCAUUCUUGGCUG

Sobic.004G3165003.015.04221-11106-1126

GGCCGUUCAGUAGGAACCGAC
|*|||||=||||||||||||=
CAGGCAAUUCAUCCUUGGCUU

Sobic.001G0830003.021.73521-11448-1468

GGCCGUUCAGUAGGAACCGAC
|||*||||||*|||||||||=
CCGCCAAGUCUUCCUUGGCUU

Sobic.001G0749003.021.31720-1760-779

GCCGUUCAGUAGGAACCGAC
|||||==*||||||||||||
CGGCACUGCAUCCUUGGCUG


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24004.841
seedling_root_AR2400_ave5.601
seedling_shoot_AR2400_ave7.045
shoot_tip_38_AR24007.346
internode_61DAP_AR2400_T7.024
internode_70DAP_AR2400_M5.766
internode_61DAP_AR2400_B8.043
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas5.747
seedling_root_Atlas7.112
seedling_shoot_Atlas_ave7.981
shoot_tip_38_Atlas7.568
internode_61DAP_Atlas_T6.349
internode_70DAP_Atlas_M6.813
internode_61DAP_Atlas_B7.751
pith_70DAP_Atlas_T7.301
pith_70DAP_Atlas_M6.034
pith_70DAP_Atlas_B6.906
pith_60DAP_Atlas_ave7.795
rind_70DAP_Atlas_T8.193
rind_70DAP_Atlas_M7.818
rind_70DAP_Atlas_B8.08
rind_60DAP_Atlas_ave7.139
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont5.554
seedling_root_Fremont_ave6.435
seedling_shoot_Fremont_ave7.361
shoot_tip_38_Fremont8.252
internode_61DAP_Fremont_T6.89
internode_70DAP_Fremont_M5.371
internode_61DAP_Fremont_B6.845
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526115.956
seedling_root_PI1526116.551
seedling_shoot_PI152611_ave6.278
shoot_tip_38_PI1526118.596
internode_61DAP_PI152611_T7.833
internode_70DAP_PI152611_M6.273
internode_61DAP_PI152611_B5.711
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552309.488
seedling_root_PI4552305.161
seedling_shoot_PI455230_ave6.361
shoot_tip_38DAP_ PI4552306.587
internode_61DAP_PI4552305.212
internode_70DAP_PI455230_M6.328
internode_61DAP_PI455230_B5.985
pith_70DAP_PI455230_M6.424
pith_70DAP_PI455230_B5.845
pith_60DAP_PI455230_ave5.598
rind_70DAP_PI455230_T5.327
rind_70DAP_PI455230_M7.107
rind_70DAP_PI455230_B5.931
rind_60DAP_PI455230_ave5.179
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1596.02
seedling_root_R1596.576
seedling_shoot_R159_ave6.334
shoot_tip_38DAP_ R1599.042
internode_61DAP_R159_T6.403
internode_61DAP_R159_B5.578
pith_70DAP_R159_T4.345
pith_70DAP_R159_B6.083
pith_60DAP_R1596.937
rind_70DAP_R159_T5.579
rind_70DAP_R159_B7.027
rind_60DAP_R1596.421

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