Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr085195469951954719+
precursorchr085195467951954857+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UGAAGCUGCCAGCAUGAUCUG
>precursor_sequence
AGUGGUGCACCACAAGUUGGUGAAGCUGCCAGCAUGAUCUGAUGUCUUUAUAUAUAUUAAUUACCUCUGAUUUCUCCCUGACUGUUAUGGAUCGAU
GAAUUCAGAUAUGAGGGGAAGGAAGAAAGAGGAAUAAUGAGCAUCAGGUCAUGCUGUAGUUUCAUCCGCUGGUGGGAGCACAU

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end		Target_aligned
start-end		Aligned Fragment:
miRNA-Target
Sobic.004G0554000.019.83421-1202-222

GUCUAGUACGACCGUCGAAGU
|||||||||||||||||||||
CAGAUCAUGCUGGCAGCUUCA

Sobic.004G2196003.016.36820-1333-352

UCUAGUACGACCGUCGAAGU
|||||=||||||*||||||*
AGAUCCUGCUGGAAGCUUCU

Sobic.004G2196003.013.63220-1482-501

UCUAGUACGACCGUCGAAGU
|||||=||||||*||||||*
AGAUCCUGCUGGAAGCUUCU

Sobic.001G0674003.022.00421-1994-1013

GUCUAGUACGACCGUCGAAGU
||||||||*||||*|||||||
CAGAUCAUCCUGG-AGCUUCA


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

All copyright are reserved by Prof. Zhen Su's lab at China Agricultural University | 2015 IE 10 Above and Chrome are suggested For suggestions,please contact web Administrator Tian Tian