Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr0143546814354701+
precursorchr0143546814354776+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UGAAGCUGCCAGCAUGAUCUA
>precursor_sequence
UGAAGCUGCCAGCAUGAUCUAGCUCUGAGUGAUCACCCGAGAAGAACAAUAGUUCGAGGUGGUCUCGCCUUGCUAGGUCAUGCUGCGGCAGCCUCA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.004G0554000.019.83420-1203-222

UCUAGUACGACCGUCGAAGU
||||||||||||||||||||
AGAUCAUGCUGGCAGCUUCA

Sobic.004G2196003.016.36820-1333-352

UCUAGUACGACCGUCGAAGU
|||||=||||||*||||||*
AGAUCCUGCUGGAAGCUUCU

Sobic.004G2196003.013.63220-1482-501

UCUAGUACGACCGUCGAAGU
|||||=||||||*||||||*
AGAUCCUGCUGGAAGCUUCU

Sobic.001G0674003.022.00420-1995-1013

UCUAGUACGACCGUCGAAGU
|||||||*||||*|||||||
AGAUCAUCCUGG-AGCUUCA


5.Secondary structure

6.GSE32458

TissueNormalization read count
leaves0.1
flower0.39
Young panicle in early grain fill0.29

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24006.16
seedling_root_AR2400_ave6.992
seedling_shoot_AR2400_ave5.845
shoot_tip_38_AR24006.444
internode_61DAP_AR2400_T2.88
internode_70DAP_AR2400_M3.398
internode_61DAP_AR2400_B7.224
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas7.429
seedling_root_Atlas7.586
seedling_shoot_Atlas_ave7.883
shoot_tip_38_Atlas7.119
internode_61DAP_Atlas_T4.837
internode_70DAP_Atlas_M7.531
internode_61DAP_Atlas_B8.225
pith_70DAP_Atlas_T3.122
pith_70DAP_Atlas_M8.489
pith_70DAP_Atlas_B8.603
pith_60DAP_Atlas_ave7.473
rind_70DAP_Atlas_T8.281
rind_70DAP_Atlas_M5.631
rind_70DAP_Atlas_B6.823
rind_60DAP_Atlas_ave6.677
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont6.603
seedling_root_Fremont_ave7.165
seedling_shoot_Fremont_ave8.429
shoot_tip_38_Fremont7.288
internode_61DAP_Fremont_T3.135
internode_70DAP_Fremont_M8.716
internode_61DAP_Fremont_B8.147
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526117.375
seedling_root_PI1526118.477
seedling_shoot_PI152611_ave7.395
shoot_tip_38_PI1526118.383
internode_61DAP_PI152611_T6.83
internode_70DAP_PI152611_M3.928
internode_61DAP_PI152611_B9.468
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552306.865
seedling_root_PI4552305.774
seedling_shoot_PI455230_ave7.443
shoot_tip_38DAP_ PI4552303.126
internode_61DAP_PI4552304.183
internode_70DAP_PI455230_M6.764
internode_61DAP_PI455230_B6.122
pith_70DAP_PI455230_M7.826
pith_70DAP_PI455230_B7.637
pith_60DAP_PI455230_ave5.892
rind_70DAP_PI455230_T6.887
rind_70DAP_PI455230_M7.388
rind_70DAP_PI455230_B4.955
rind_60DAP_PI455230_ave4.020
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1597.303
seedling_root_R1597.622
seedling_shoot_R159_ave5.916
shoot_tip_38DAP_ R1597.177
internode_61DAP_R159_T3.166
internode_61DAP_R159_B3.818
pith_70DAP_R159_T5.361
pith_70DAP_R159_B6.284
pith_60DAP_R1596.798
rind_70DAP_R159_T8.638
rind_70DAP_R159_B6.851
rind_60DAP_R1597.146

All copyright are reserved by Prof. Zhen Su's lab at China Agricultural University | 2015 IE 10 Above and Chrome are suggested For suggestions,please contact web Administrator Tian Tian