Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr017267620872676227-
precursorchr017267620472676311-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UCGGACCAGGCUUCAUUCCC
>precursor_sequence
UGUGGAAUGUUGUCUGGUUCUAGGCCUCUCUCUACAUGCAAGCAUGGAUGUAGUAGCAGCCUACUGCAAUUGCUUGCUGGGACCUCGGACCAGGCU
UCAUUCCCCUCA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.003G0283002.024.22120-1633-652

CCCUUACUUCGGACCAGGCU
*||=|||||||||||||||=
CGGGAUGAAGCCUGGUCCGG

Sobic.008G1681002.020.51420-1865-884

CCCUUACUUCGGACCAGGCU
=||=|||||||||||||||=
UGGGAUGAAGCCUGGUCCGG

Sobic.001G1574002.022.1620-1928-947

CCCUUACUUCGGACCAGGCU
=||=|||||||||||||||=
UGGGAUGAAGCCUGGUCCGG

Sobic.001G2172002.018.39620-11168-1187

CCCUUACUUCGGACCAGGCU
=||=|||||||||||||||=
UGGGAUGAAGCCUGGUCCGG

Sobic.001G2172002.018.39620-11212-1231

CCCUUACUUCGGACCAGGCU
=||=|||||||||||||||=
UGGGAUGAAGCCUGGUCCGG

Sobic.001G5373002.023.52620-11348-1367

CCCUUACUUCGGACCAGGCU
=||=|||||||||||||||=
UGGGAUGAAGCCUGGUCCGG

Sobic.001G3266003.013.44620-11088-1107

CCCUUACUUCGGACCAGGCU
||*||||||==||||||=||
GGCAAUGAAUUCUGGUCUGA

Sobic.006G0961003.020.94620-1458-477

CCCUUACUUCGGACCAGGCU
|=|=||||||||*|||||||
GUGCAUGAAGCCCGGUCCGA


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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