Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr046422509764225117-
precursorchr046422507864225211-more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UCGGACCAGGCUUCAAUCCCU
>precursor_sequence
UCAUGCUCGGAUUAGGUUAGGGGGAUUGUUGUCUGGCUCGGGGUCUCCGGUCGAGAAUCCUUGGCCUUGCCGGAGUUGUCGUUGACCGGAGAUUUC
GGACCAGGCUUCAAUCCCUUUAACCAUGCGGCAUUUAG

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.004G0110003.019.20420-11107-1126

CCCUAACUUCGGACCAGGCU
=||||||=|||*|||||=||
UGGAUUGGAGCAUGGUCUGA

Sobic.003G0283003.024.22120-1633-652

CCCUAACUUCGGACCAGGCU
*||=*||||||||||||||=
CGGGAUGAAGCCUGGUCCGG

Sobic.008G1681003.020.51420-1865-884

CCCUAACUUCGGACCAGGCU
=||=*||||||||||||||=
UGGGAUGAAGCCUGGUCCGG

Sobic.001G1574003.022.1620-1928-947

CCCUAACUUCGGACCAGGCU
=||=*||||||||||||||=
UGGGAUGAAGCCUGGUCCGG

Sobic.001G2172003.018.39620-11168-1187

CCCUAACUUCGGACCAGGCU
=||=*||||||||||||||=
UGGGAUGAAGCCUGGUCCGG

Sobic.001G2172003.018.39620-11212-1231

CCCUAACUUCGGACCAGGCU
=||=*||||||||||||||=
UGGGAUGAAGCCUGGUCCGG

Sobic.001G5373003.023.52620-11348-1367

CCCUAACUUCGGACCAGGCU
=||=*||||||||||||||=
UGGGAUGAAGCCUGGUCCGG


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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