Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr026143994261439962+
precursorchr026143983161439981+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UCGGACCAGGCUUCAAUCCCU
>precursor_sequence
CAAGUUGAAGGUUAGGUUAAUGGGGUUGUUGUCUGGUUCAAGGUCGCCACAGCAGACAAAGCCCAUUUUGCUUAGCAUGCAGCAUGGGUUUAUCUC
UAUUGAUGAUCGAUCUCGGACCAGGCUUCAAUCCCUUUAACUAGCAUCUGCAUAU

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end		Target_aligned
start-end		Aligned Fragment:
miRNA-Target
Sobic.004G0110003.019.20420-11107-1126

CCCUAACUUCGGACCAGGCU
=||||||=|||*|||||=||
UGGAUUGGAGCAUGGUCUGA

Sobic.003G0283003.024.22120-1633-652

CCCUAACUUCGGACCAGGCU
*||=*||||||||||||||=
CGGGAUGAAGCCUGGUCCGG

Sobic.008G1681003.020.51420-1865-884

CCCUAACUUCGGACCAGGCU
=||=*||||||||||||||=
UGGGAUGAAGCCUGGUCCGG

Sobic.001G1574003.022.1620-1928-947

CCCUAACUUCGGACCAGGCU
=||=*||||||||||||||=
UGGGAUGAAGCCUGGUCCGG

Sobic.001G2172003.018.39620-11168-1187

CCCUAACUUCGGACCAGGCU
=||=*||||||||||||||=
UGGGAUGAAGCCUGGUCCGG

Sobic.001G2172003.018.39620-11212-1231

CCCUAACUUCGGACCAGGCU
=||=*||||||||||||||=
UGGGAUGAAGCCUGGUCCGG

Sobic.001G5373003.023.52620-11348-1367

CCCUAACUUCGGACCAGGCU
=||=*||||||||||||||=
UGGGAUGAAGCCUGGUCCGG


5.Secondary structure

6.GSE32458

null

7.GSE49879
AR2400 under different growth stagelog2(expression profile data)
leaf_38_AR24005.997
seedling_root_AR2400_ave6.187
seedling_shoot_AR2400_ave6.268
shoot_tip_38_AR24005.202
internode_61DAP_AR2400_T6.968
internode_70DAP_AR2400_M6.051
internode_61DAP_AR2400_B6.608
Atlas under different growth stage log2(expression profile data)
leaf_38_Atlas5.932
seedling_root_Atlas5.876
seedling_shoot_Atlas_ave5.683
shoot_tip_38_Atlas5.301
internode_61DAP_Atlas_T6.054
internode_70DAP_Atlas_M5.498
internode_61DAP_Atlas_B5.247
pith_70DAP_Atlas_T6.414
pith_70DAP_Atlas_M5.894
pith_70DAP_Atlas_B5.636
pith_60DAP_Atlas_ave5.453
rind_70DAP_Atlas_T5.608
rind_70DAP_Atlas_M5.155
rind_70DAP_Atlas_B6.035
rind_60DAP_Atlas_ave5.717
Fremont under different growth stagelog2(expression profile data)
leaf_38_Fremont5.615
seedling_root_Fremont_ave5.875
seedling_shoot_Fremont_ave5.422
shoot_tip_38_Fremont5.572
internode_61DAP_Fremont_T7.09
internode_70DAP_Fremont_M5.314
internode_61DAP_Fremont_B5.305
PI152611 under different growth stagelog2(expression profile data)
leaf_38_PI1526115.883
seedling_root_PI1526115.74
seedling_shoot_PI152611_ave6.999
shoot_tip_38_PI1526116.212
internode_61DAP_PI152611_T6.122
internode_70DAP_PI152611_M6.651
internode_61DAP_PI152611_B7.265
PI455230 under different growth stagelog2(expression profile data)
leaf_38DAP_ PI4552305.534
seedling_root_PI4552305.897
seedling_shoot_PI455230_ave6.073
shoot_tip_38DAP_ PI4552306.792
internode_61DAP_PI4552305.993
internode_70DAP_PI455230_M6.737
internode_61DAP_PI455230_B6.464
pith_70DAP_PI455230_M6.433
pith_70DAP_PI455230_B6.204
pith_60DAP_PI455230_ave5.658
rind_70DAP_PI455230_T5.459
rind_70DAP_PI455230_M5.863
rind_70DAP_PI455230_B6.463
rind_60DAP_PI455230_ave6.056
R159 under different growth stagelog2(expression profile data)
leaf_38DAP_ R1596.256
seedling_root_R1595.577
seedling_shoot_R159_ave6.303
shoot_tip_38DAP_ R1595.663
internode_61DAP_R159_T6.538
internode_61DAP_R159_B5.843
pith_70DAP_R159_T5.496
pith_70DAP_R159_B5.46
pith_60DAP_R1595.47
rind_70DAP_R159_T5.916
rind_70DAP_R159_B5.964
rind_60DAP_R1595.624

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