Sorghum Functional Genomics Database

miRNA detail information

1.miRNA detail image
detail
more details in gbrowse

2.Location informaition
TypeChromosomeStartEndStrandSNP(TSS up 2kb)SNP(gene body)
maturechr0727305312730551+
precursorchr0727305312730613+more details in SorGSD more details in SorGSD

3.miRNA sequence
>mature_sequence
UGCCUGGCUCCCUGUAUGCCA
>precursor_sequence
UGCCUGGCUCCCUGUAUGCCACUCAUCUAGAUCAACAACUACCUAUGGUUGCCUAUGAUGGUUGGCGUGCACGGUGCCAAGCA

4.Target gene

Target geneExpectationUPEmiRNA_aligned
start-end
Target_aligned
start-end
Aligned Fragment:
miRNA-Target
Sobic.010G2363000.023.11720-12146-2165

CCGUAUGUCCCUCGGUCCGU
||||||||||||||||||||
GGCAUACAGGGAGCCAGGCA

Sobic.001G2173000.020.50220-11880-1899

CCGUAUGUCCCUCGGUCCGU
||||||||||||||||||||
GGCAUACAGGGAGCCAGGCA


5.Secondary structure

6.GSE32458

null

7.GSE49879
null

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